MultiMap: An Expert System for Automated Genetic Linkage Mapping. - Tara Cox Matise; Mark Perlin; Aravinda Chakravarti (ISMB, 1993)

Discrepancies in dbSNP confirmation rates and allele frequency distributions from varying genotyping error rates and patterns. - Adele A. Mitchell; Michael E. Zwick; Aravinda Chakravarti; David J. Cutler (Bioinform., 2004)

Estimating Genome-Wide Copy Number Using Allele-Specific Mixture Models. - Wenyi Wang 001; Benilton S. Carvalho; Nathaniel D. Miller; Jonathan Pevsner; Aravinda Chakravarti; Rafael A. Irizarry (J. Comput. Biol., 2008)

Next-Generation Sequencing of Human Mitochondrial Reference Genomes Uncovers High Heteroplasmy Frequency. - Maria Ximena Sosa; I. K. Ashok Sivakumar; Samantha Maragh; Vamsi Veeramachaneni; Ramesh Hariharan; Minothi Parulekar; Karin M. Fredrikson; Timothy T. Harkins; Jeffrey Lin; Andrew B. Feldman; Pramila Tata; Georg B. Ehret; et al. (PLoS Comput. Biol., 2012)