Distribution of words with a predefined range of mismatches to a DNA probe in bacterial genomes. - O. Michael Melko; Arcady R. Mushegian (Bioinform., 2004)

The choice of optimal distance measure in genome-wide datasets. - Galina V. Glazko; Alexander Gordon; Arcady R. Mushegian (Bioinform., 2005)

Detecting periodic patterns in unevenly spaced gene expression time series using Lomb-Scargle periodograms. - Earl F. Glynn; Jie Chen 008; Arcady R. Mushegian (Bioinform., 2006)

A topological algorithm for identification of structural domains of proteins. - Frank Emmert-Streib; Arcady R. Mushegian (BMC Bioinform., 2007)

A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches. - David M. Kristensen; Lavanya Kannan; Michael K. Coleman; Yuri I. Wolf; Alexander Sorokin; Eugene V. Koonin; Arcady R. Mushegian (Bioinform., 2010)

Computational methods for Gene Orthology inference. - David M. Kristensen; Yuri I. Wolf; Arcady R. Mushegian; Eugene V. Koonin (Briefings Bioinform., 2011)

A Polynomial-Time Algorithm Computing Lower and Upper Bounds of the Rooted Subtree Prune and Regraft Distance. - Lavanya Kannan; Hua Li; Arcady R. Mushegian (J. Comput. Biol., 2011)

Measuring similarity between gene interaction profiles. - Joëlle Barido-Sottani; Samuel D. Chapman; Evsey Kosman; Arcady R. Mushegian (BMC Bioinform., 2019)