AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets. - Hongfang Liu; Barry Zeeberg; Gang Qu 001; Akif Günes Koru; Alessandro Ferrucci; Ari B. Kahn; Michael C. Ryan; Antej Nuhanovic; Peter J. Munson; William C. Reinhold; David W. Kane; John N. Weinstein (Bioinform., 2007)

SpliceMiner: a high-throughput database implementation of the NCBI Evidence Viewer for microarray splice variant analysis. - Ari B. Kahn; Michael C. Ryan; Hongfang Liu; Barry Zeeberg; D. Curtis Jamison; John N. Weinstein (BMC Bioinform., 2007)

SpliceCenter: A suite of web-based bioinformatic applications for evaluating the impact of alternative splicing on RT-PCR, RNAi, microarray, and peptide-based studies. - Michael C. Ryan; Barry Zeeberg; Natasha J. Caplen; James A. Cleland; Ari B. Kahn; Hongfang Liu; John N. Weinstein (BMC Bioinform., 2008)

Ontogenomic study of the relationship between number of gene splice variants and GO categorization. - Ari B. Kahn; Barry Zeeberg; Michael C. Ryan; D. Curtis Jamison; David M. Rockoff; Yves Pommier; John N. Weinstein (Bioinform., 2010)

RedundancyMiner: De-replication of redundant GO categories in microarray and proteomics analysis. - Barry Zeeberg; Hongfang Liu; Ari B. Kahn; Martin Ehler; Vinodh N. Rajapakse; Robert F. Bonner; Jacob D. Brown; Brian P. Brooks; Vladimir L. Larionov; William C. Reinhold; John N. Weinstein; Yves Pommier (BMC Bioinform., 2011)