A Distance-Based Branch and Bound Feature Selection Algorithm. - Ari Frank; Dan Geiger; Zohar Yakhini (UAI, 2003)

Peptide Sequence Tags for Fast Database Search in Mass-Spectrometry. - Ari Frank; Stephen Tanner; Pavel A. Pevzner (RECOMB, 2005)

A New Approach to Protein Identification. - Nuno Bandeira; Dekel Tsur; Ari Frank; Pavel A. Pevzner (RECOMB, 2006)

Protein identification by spectral networks analysis. - Nuno Bandeira; Dekel Tsur; Ari Frank; Pavel A. Pevzner (Proc. Natl. Acad. Sci. USA, 2007)

Predicting Execution Bottlenecks in Map-Reduce Clusters. - Edward Bortnikov; Ari Frank; Eshcar Hillel; Sriram Rao (HotCloud, 2012)