A Method for Estimating Metabolic Fluxes from Incomplete Isotopomer Information. - Juho Rousu; Ari Rantanen; Hannu Maaheimo; Esa Pitkänen; Katja Saarela; Esko Ukkonen (CMSB, 2003)

Planning isotopomer measurements for estimation of metabolic fluxes. - Ari Rantanen; Taneli Mielikäinen; Juho Rousu; Esko Ukkonen (German Conference on Bioinformatics, 2005)

Finding Feasible Pathways in Metabolic Networks. - Esa Pitkänen; Ari Rantanen; Juho Rousu; Esko Ukkonen (Panhellenic Conference on Informatics, 2005)

Ab Initio Prediction of Molecular Fragments from Tandem Mass Spectrometry Data. - Markus Heinonen; Ari Rantanen; Taneli Mielikäinen; Esa Pitkänen; Juha Kokkonen; Juho Rousu (German Conference on Bioinformatics, 2006)

Planning optimal measurements of isotopomer distributions for estimation of metabolic fluxes. - Ari Rantanen; Taneli Mielikäinen; Juho Rousu; Hannu Maaheimo; Esko Ukkonen (Bioinform., 2006)

Equivalence of Metabolite Fragments and Flow Analysis of Isotopomer Distributions for Flux Estimation. - Ari Rantanen; Hannu Maaheimo; Esa Pitkänen; Juho Rousu; Esko Ukkonen (Trans. Comp. Sys. Biology, 2006)

A Computational Method for Reconstructing Gapless Metabolic Networks. - Esa Pitkänen; Ari Rantanen; Juho Rousu; Esko Ukkonen (BIRD, 2008)

An analytic and systematic framework for estimating metabolic flux ratios from 13C tracer experiments. - Ari Rantanen; Juho Rousu; Paula Jouhten; Nicola Zamboni; Hannu Maaheimo; Esko Ukkonen (BMC Bioinform., 2008)

ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis. - Esa Pitkänen; Arto Åkerlund; Ari Rantanen; Paula Jouhten; Esko Ukkonen (J. Integr. Bioinform., 2008)