Assessing the Accuracy of the SIRAH Force Field to Model DNA at Coarse Grain Level. - Pablo D. Dans; Leonardo Darré; Matías R. Machado; Ari Zeida; Astrid F. Brandner; Sergio Pantano (BSB, 2013)

Multiscale Modeling of Thiol Overoxidation in Peroxiredoxins by Hydrogen Peroxide. - Jonathan Alexis Semelak; Federica Battistini; Rafael Radi; Madia Trujillo; Ari Zeida; Dario A. Estrin (J. Chem. Inf. Model., 2020)

Novel Lennard-Jones Parameters for Cysteine and Selenocysteine in the AMBER Force Field. - Federico N. Pedron; Andresa Messias; Ari Zeida; Adrian E. Roitberg; Dario A. Estrin (J. Chem. Inf. Model., 2023)