miQC: An adaptive probabilistic framework for quality control of single-cell RNA-sequencing data. - Ariel A. Hippen; Matias M. Falco; Lukas M. Weber; Erdogan Pekcan Erkan; Kaiyang Zhang; Jennifer Anne Doherty; Anna Vähärautio; Casey S. Greene; Stephanie C. Hicks (PLoS Comput. Biol., 2021)

wenda_gpu: fast domain adaptation for genomic data. - Ariel A. Hippen; Jake Crawford; Jacob R. Gardner; Casey S. Greene (Bioinform., 2022)