Evolutionary Spatial Games Under Stress. - Julia Alonso; Ariel Fernández; Hugo Fort (International Conference on Computational Science (3), 2006)

Molecular basis for specificity in the druggable kinome: sequence-based analysis. - Jianping Chen; Xi Zhang; Ariel Fernández (Bioinform., 2007)

Molecular Basis for Evolving Modularity in the Yeast Protein Interaction Network. - Ariel Fernández (PLoS Comput. Biol., 2007)

Likelihood of side effects depends on desired clinical impact: Affinities within a very small set of targets enables inference of promiscuity or specificity of kinase inhibitors. - Quoc-Nam Tran; Valentin Andreev; Ariel Fernández (BIBM Workshops, 2012)

Artificial Intelligence Steering Molecular Therapy in the Absence of Information on Target Structure and Regulation. - Ariel Fernández (J. Chem. Inf. Model., 2020)

Artificial Intelligence Platform for Molecular Targeted Therapy - A Translational Science Approach - Ariel Fernández (Artificial Intelligence Platform for Molecular Targeted Therapy, 2021)

Molecular dynamics without molecules: searching the conformational space of proteins with generative neural networks. - Gregory Schwing; Luigi Leonardo Palese; Ariel Fernández; Loren Schwiebert; Domenico L. Gatti (CoRR, 2022)