Integration of Biomolecular Interaction Data in a Genomic and Proteomic Data Warehouse to Support Biomedical Knowledge Discovery. - Arif Canakoglu; Giorgio Ghisalberti; Marco Masseroli (CIBB, 2011)

Integrative warehousing of biomolecular information to support complex multi-topic queries for biomedical knowledge discovery. - Arif Canakoglu; Marco Masseroli; Stefano Ceri; Luca Tettamanti; Giorgio Ghisalberti; Alessandro Campi (BIBE, 2013)

Biomolecular Annotation Integration and Querying to Help Unveiling New Biomedical Knowledge. - Arif Canakoglu; Stefano Ceri; Marco Masseroli (IWBBIO, 2016)

Integration and Querying of Genomic and Proteomic Semantic Annotations for Biomedical Knowledge Extraction. - Marco Masseroli; Arif Canakoglu; Stefano Ceri (IEEE ACM Trans. Comput. Biol. Bioinform., 2016)

Modular schema based data warehousing of evolving, redundant and incomplete data: application to biomolecular knowledge data integration and inference. - Arif Canakoglu (2016)

Experiences in the Development of a Data Management System for Genomics. - Stefano Ceri; Arif Canakoglu; Abdulrahman Kaitoua; Marco Masseroli; Pietro Pinoli (DATA (Revised Selected Papers), 2017)

Overview of GeCo: A Project for Exploring and Integrating Signals from the Genome. - Stefano Ceri; Anna Bernasconi 002; Arif Canakoglu; Andrea Gulino; Abdulrahman Kaitoua; Marco Masseroli; Luca Nanni; Pietro Pinoli (DAMDID/RCDL (Selected Papers), 2017)

Data-Driven Genomic Computing: Making sense of Signals from the Genome. - Stefano Ceri; Arif Canakoglu; Abdulrahman Kaitoua; Marco Masseroli; Pietro Pinoli (DAMDID/RCDL, 2017)

Designing and Evaluating Deep Learning Models for Cancer Detection on Gene Expression Data. - Arif Canakoglu; Luca Nanni; Artur Sokolovsky; Stefano Ceri (CIBB, 2018)

Demonstration of GenoMetric Query Language. - Stefano Ceri; Arif Canakoglu; Andrea Gulino; Abdulrahman Kaitoua; Marco Masseroli; Luca Nanni; Pietro Pinoli (CIKM, 2018)

Exploiting Ladder Networks for Gene Expression Classification. - Guray Golcuk; Mustafa Anil Tuncel; Arif Canakoglu (IWBBIO (1), 2018)

Exploring Genomic Datasets: from Batch to Interactive and Back. - Luca Nanni; Pietro Pinoli; Arif Canakoglu; Stefano Ceri (ExploreDB@SIGMOD/PODS, 2018)

Ontology-driven metadata enrichment for genomic datasets. - Anna Bernasconi 002; Arif Canakoglu; Andrea Colombo; Stefano Ceri (SWAT4LS, 2018)

Analysis and Visualization of Mutation Enrichments for Selected Genomic Regions and Cancer Types. - Andrea Gulino; Eirini Stamoulakatou; Arif Canakoglu; Pietro Pinoli (BIBM, 2019)

Evaluating Deep Semi-supervised Learning for Whole-Transcriptome Breast Cancer Subtyping. - Silvia Cascianelli; Francisco Cristovao; Arif Canakoglu; Mark J. Carman; Luca Nanni; Pietro Pinoli; Marco Masseroli (CIBB, 2019)

From a Conceptual Model to a Knowledge Graph for Genomic Datasets. - Anna Bernasconi 002; Arif Canakoglu; Stefano Ceri (ER, 2019)

Exploiting Conceptual Modeling for Searching Genomic Metadata: A Quantitative and Qualitative Empirical Study. - Anna Bernasconi 002; Arif Canakoglu; Stefano Ceri (ER Workshops, 2019)

GenoSurf: metadata driven semantic search system for integrated genomic datasets. - Arif Canakoglu; Anna Bernasconi 002; Andrea Colombo; Marco Masseroli; Stefano Ceri (Database J. Biol. Databases Curation, 2019)

Processing of big heterogeneous genomic datasets for tertiary analysis of Next Generation Sequencing data. - Marco Masseroli; Arif Canakoglu; Pietro Pinoli; Abdulrahman Kaitoua; Andrea Gulino; Olha Horlova; Luca Nanni; Anna Bernasconi 002; Stefano Perna; Eirini Stamoulakatou; Stefano Ceri (Bioinform., 2019)

PyGMQL: scalable data extraction and analysis for heterogeneous genomic datasets. - Luca Nanni; Pietro Pinoli; Arif Canakoglu; Stefano Ceri (BMC Bioinform., 2019)

Empowering Virus Sequence Research Through Conceptual Modeling. - Anna Bernasconi 002; Arif Canakoglu; Pietro Pinoli; Stefano Ceri (ER, 2020)

Performance Prediction for Data-driven Workflows on Apache Spark. - Andrea Gulino; Arif Canakoglu; Stefano Ceri; Danilo Ardagna (MASCOTS, 2020)

Automated Integration of Genomic Metadata with Sequence-to-Sequence Models. - Giuseppe Cannizzaro; Michele Leone; Anna Bernasconi 002; Arif Canakoglu; Mark J. Carman (ECML/PKDD (5), 2020)

OpenGDC. - Fabio Cumbo; Eleonora Cappelli; Anna Bernasconi 002; Arif Canakoglu; Stefano Ceri; Marco Masseroli; Emanuel Weitschek (Zenodo, 2020)

Ensemble Feature Selection for Single Cell Chromatin Conformation Analysis. - Amirreza Rouhi; Luca Nanni; Arif Canakoglu; Pietro Pinoli; Stefano Ceri (ICBBT, 2021)

The road towards data integration in human genomics: players, steps and interactions. - Anna Bernasconi 002; Arif Canakoglu; Marco Masseroli; Stefano Ceri (Briefings Bioinform., 2021)

A review on viral data sources and search systems for perspective mitigation of COVID-19. - Anna Bernasconi 002; Arif Canakoglu; Marco Masseroli; Pietro Pinoli; Stefano Ceri (Briefings Bioinform., 2021)

Federated sharing and processing of genomic datasets for tertiary data analysis. - Arif Canakoglu; Pietro Pinoli; Andrea Gulino; Luca Nanni; Marco Masseroli; Stefano Ceri (Briefings Bioinform., 2021)

EpiSurf: metadata-driven search server for analyzing amino acid changes within epitopes of SARS-CoV-2 and other viral species. - Anna Bernasconi 002; Luca Cilibrasi; Ruba Al Khalaf; Tommaso Alfonsi; Stefano Ceri; Pietro Pinoli; Arif Canakoglu (Database J. Biol. Databases Curation, 2021)

ViruSurf: an integrated database to investigate viral sequences. - Arif Canakoglu; Pietro Pinoli; Anna Bernasconi 002; Tommaso Alfonsi; Damianos P. Melidis; Stefano Ceri (Nucleic Acids Res., 2021)

ViruClust: direct comparison of SARS-CoV-2 genomes and genetic variants in space and time. - Luca Cilibrasi; Pietro Pinoli; Anna Bernasconi 002; Arif Canakoglu; Matteo Chiara; Stefano Ceri (Bioinform., 2022)

Genomic data integration and user-defined sample-set extraction for population variant analysis. - Tommaso Alfonsi; Anna Bernasconi 002; Arif Canakoglu; Marco Masseroli (BMC Bioinform., 2022)

GeCoAgent: A Conversational Agent for Empowering Genomic Data Extraction and Analysis. - Pietro Crovari; Sara Pidò; Pietro Pinoli; Anna Bernasconi 002; Arif Canakoglu; Franca Garzotto; Stefano Ceri (ACM Trans. Comput. Heal., 2022)

META-BASE: A Novel Architecture for Large-Scale Genomic Metadata Integration. - Anna Bernasconi 002; Arif Canakoglu; Marco Masseroli; Stefano Ceri (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Investigating Deep Learning Based Breast Cancer Subtyping Using Pan-Cancer and Multi-Omic Data. - Francisco Cristovao; Silvia Cascianelli; Arif Canakoglu; Mark J. Carman; Luca Nanni; Pietro Pinoli; Marco Masseroli (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

VariantHunter: a method and tool for fast detection of emerging SARS-CoV-2 variants. - Pietro Pinoli; Arif Canakoglu; Stefano Ceri; Matteo Chiara; Erika Ferrandi; Luca Minotti; Anna Bernasconi 002 (Database J. Biol. Databases Curation, 2023)