BlastAlign: a program that uses blast to align problematic nucleotide sequences. - Robert Belshaw; Aris Katzourakis (Bioinform., 2005)

Phylogenetic Analysis Reveals That ERVs "Die Young" but HERV-H Is Unusually Conserved. - Patrick Gemmell; Jotun Hein; Aris Katzourakis (PLoS Comput. Biol., 2016)

Ecological and evolutionary dynamics of cell-virus-virophage systems. - Jose Gabriel Nino Barreat; Aris Katzourakis (PLoS Comput. Biol., 2024)