Automated Angiogenesis Quantification through advanced Image Processing Techniques. - Charalampos N. Doukas; Ilias Maglogiannis; Aristotelis A. Chatziioannou; Andreas Papapetropoulos (EMBC, 2006)

An Application Platform Enabling High Performance Grid Processing of Microarray Experiments. - Ilias Maglogiannis; Aristotelis Chatziioannou; John Soldatos 001; Vasileios Mylonakis; Yiannis Kanaris (CBMS, 2007)

ANDROMEDA: A MATLAB Automated cDNA Microarray Data Analysis Platform. - Aristotelis A. Chatziioannou; Panagiotis Moulos (AIAI, 2007)

A Web Based System Enabling Distributed Access and Intelligent Processing of Bioinformatics Data in Grid Environments. - Ilias Maglogiannis; John Soldatos 001; Aristotelis Chatziioannou; Vasileios Mylonakis; Yiannis Kanaris (AIAI, 2007)

Interpretation of gene expression microarray experiments. - Aristotelis Chatziioannou; Panagiotis Moulos (Emerging Artificial Intelligence Applications in Computer Engineering, 2007)

Building in-silico pathway SBML models from heterogeneous sources. - Yiannis Kanaris; Konstantinos Moutselos; Aristotelis Chatziioannou; Ilias Maglogiannis; Fragiskos N. Kolisis (BIBE, 2008)

Computer-Supported Angiogenesis Quantification Using Image Analysis and Statistical Averaging. - Charalampos N. Doukas; Ilias Maglogiannis; Aristotle A. Chatziioannou (IEEE Trans. Inf. Technol. Biomed., 2008)

Radial Basis Function Neural Networks Classification for the Recognition of Idiopathic Pulmonary Fibrosis in Microscopic Images. - Ilias Maglogiannis; Haralambos Sarimveis; Chris T. Kiranoudis; Aristotelis A. Chatziioannou; N. Oikonomou; Vassilis Aidinis (IEEE Trans. Inf. Technol. Biomed., 2008)

Gene ARMADA: an integrated multi-analysis platform for microarray data implemented in MATLAB. - Aristotelis Chatziioannou; Panagiotis Moulos; Fragiskos N. Kolisis (BMC Bioinform., 2009)

KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database. - Konstantinos Moutselos; Ioannis Kanaris; Aristotelis Chatziioannou; Ilias Maglogiannis; Fragiskos N. Kolisis (BMC Bioinform., 2009)

An in-silico model of the biosynthesis of neurotransmitter glutamate, elucidates the complex regulatory role of glucocorticoids in neurotransmitter glutamate release. - Aristotelis Chatziioannou; Georgios Palaiologos; Fragiskos N. Kolisis (Comput. Biol. Medicine, 2009)

HECTOR: Enabling Microarray Experiments over the Hellenic Grid Infrastructure. - Ioannis Kanaris; Vasileios Mylonakis; Aristotelis Chatziioannou; Ilias Maglogiannis; John Soldatos 001 (J. Grid Comput., 2009)

Enabling distributed Processing and Management of biological Data using the Grid and Web Technologies. - Aristotelis A. Chatziioannou; Ioannis Kanaris; Charalampos Doukas; Ypapanti Thermou; Ilias Maglogiannis (HealthGrid, 2010)

Unifying the integration, analysis and interpretation of multi-omic datasets: Exploration of the disease networks of Obstructive Nephropathy in children. - Panagiotis Moulos; Ioannis Valavanis; Julie Klein 002; Ilias Maglogiannis; Joost Schanstra; Aristotelis Chatziioannou (EMBC, 2011)

Intelligent Selection of Human miRNAs and Mouse mRNAs Related to Obstructive Nephropathy. - Ioannis Valavanis; Panagiotis Moulos; Ilias Maglogiannis; Julie Klein 002; Joost Schanstra; Aristotelis Chatziioannou (AIAI, 2011)

Elucidating the identity of resistance mechanisms to prednisolone exposure in acute lymphoblastic leukemia cells through transcriptomic analysis: A computational approach. - Emmanouil G. Sifakis; George I. Lambrou; Andriana Prentza; Spiros Vlahopoulos; Dimitris Koutsouris; Fotini Tzortzatou-Stathopoulou; Aristotelis A. Chatziioannou (J. Clin. Bioinform., 2011)

GOrevenge: A Novel Generic Reverse Engineering Method for the Identification of Critical Molecular Players, Through the Use of Ontologies. - Konstantinos Moutselos; Ilias Maglogiannis; Aristotelis Chatziioannou (IEEE Trans. Biomed. Eng., 2011)

GRISSOM Platform: Enabling Distributed Processing and Management of Biological Data Through Fusion of Grid and Web Technologies. - Aristotelis A. Chatziioannou; Ioannis Kanaris; Charalampos Doukas; Panagiotis Moulos; Fragiskos N. Kolisis; Ilias Maglogiannis (IEEE Trans. Inf. Technol. Biomed., 2011)

Heterogeneous data fusion and selection in high-volume molecular and imaging datasets. - Konstantinos Moutselos; Ilias Maglogiannis; Aristotelis Chatziioannou (BIBE, 2012)

Analysis of DNA methylation epidemiological data through a generic composite statistical framework. - Ioannis Valavanis; Emmanouil G. Sifakis; Panagiotis Georgiadis 003; Sotirios Kyrtopoulos; Aristotelis A. Chatziioannou (BIBE, 2012)

Advanced characterization of microscopic Kidney biopsies utilizing image analysis techniques. - Theodosios Goudas; Charalampos Doukas; Aristotle A. Chatziioannou; Ilias Maglogiannis (EMBC, 2012)

Advanced Block Detection and Quantification of Fibrotic Areas in Microscopy Images of Obstructive Nephropathy. - Theodosios Goudas; Ilias Maglogiannis; Aristotle A. Chatziioannou (ICTAI, 2012)

Feature Selection Study on Separate Multi-modal Datasets: Application on Cutaneous Melanoma. - Konstantinos Moutselos; Aristotelis Chatziioannou; Ilias Maglogiannis (AIAI (2), 2012)

Bioinformatic Analysis of Expression Data of ApoE Deficient Mice. - Olga Papadodima; Allan Sirsjö; Aristotelis Chatziioannou (SETN, 2012)

A Galaxy Workflow for the Functional Annotation of Metagenomic Samples. - Eleftherios Pilalis; Eythymios Ladoukakis; Fragiskos N. Kolisis; Aristotelis Chatziioannou (SETN, 2012)

Application of an Integrative Computational Framework in Trancriptomic Data of Atherosclerotic Mice Suggests Numerous Molecular Players. - Olga Papadodima; Allan Sirsjö; Fragiskos N. Kolisis; Aristotelis Chatziioannou (Adv. Bioinformatics, 2012)

Evaluating the effect of various background correction methods regarding noise reduction, in two-channel microarray data. - Emmanouil G. Sifakis; Andriana Prentza; Dimitris Koutsouris; Aristotelis A. Chatziioannou (Comput. Biol. Medicine, 2012)

Integrative transcriptomic analysis of two cell lines elucidates the architecture of endoplasmic reticulum stress signaling in glioblastoma. - Aristotelis A. Chatziioannou; Olga Papadodima; Nicolas Dejeans; Eric Chevet (BIBE, 2013)

Prediction of enzymatic activity of proteins based on structural and functional domains. - Theodoros Koutsandreas; Eleftherios Pilalis; Aristotelis A. Chatziioannou (BIBE, 2013)

Prioritized functional analysis of biological experiments using resampling and noise control methodologies. - Eleftherios Pilalis; Aristotelis Chatziioannou (BIBE, 2013)

Identifying gender independent biomarkers responsible for human muscle aging using microarray data. - Emmanouil G. Sifakis; Ioannis Valavanis; Olga Papadodima; Aristotelis A. Chatziioannou (BIBE, 2013)

Inference of a robust diagnostic signature in the case of Melanoma: Gene selection by information gain and Gene Ontology tree exploration. - Ioannis Valavanis; Konstantinos Moutselos; Ilias Maglogiannis; Aristotelis A. Chatziioannou (BIBE, 2013)

Derivation of Cancer Related Biomarkers from DNA Methylation Data from an Epidemiological Cohort. - Ioannis Valavanis; Emmanouil G. Sifakis; Panagiotis Georgiadis 003; Sotirios Kyrtopoulos; Aristotelis A. Chatziioannou (EANN (2), 2013)

A Machine-Learning Approach for theof Enzymatic Activity of Proteins in Metagenomic Samples. - Theodoros Koutsandreas; Eleftherios Pilalis; Aristotelis Chatziioannou (AIAI, 2013)

Gene Prioritization for Inference of Robust Composite Diagnostic Signatures in the Case of Melanoma. - Ioannis Valavanis; Konstantinos Moutselos; Ilias Maglogiannis; Aristotelis Chatziioannou (AIAI, 2013)

Intelligent identification of biomarkers for the study of obstructive nephropathy. - Ioannis Valavanis; Ilias Maglogiannis; Aristotelis Chatziioannou (Intell. Decis. Technol., 2013)

A Collaborative Biomedical Image-Mining Framework: Application on the Image Analysis of Microscopic Kidney Biopsies. - Theodosios Goudas; Charalampos Doukas; Aristotle A. Chatziioannou; Ilias Maglogiannis (IEEE J. Biomed. Health Informatics, 2013)

A Composite Framework for the Statistical Analysis of Epidemiological DNA Methylation Data with the Infinium Human Methylation 450K BeadChip. - Ioannis Valavanis; Emmanouil G. Sifakis; Panagiotis Georgiadis 003; Sotirios Kyrtopoulos; Aristotelis A. Chatziioannou (IEEE J. Biomed. Health Informatics, 2014)

Making sense of the biological complexity through the platform-driven unification of the analytical and visualization tasks. - Theodoras Koutsandreas; Eleftherios Pilalis; Efstathios Iason Vlachavas; Dirk Koczan; Sven Klippel; Antonia Dimitrakopoulou-Strauss; Ioannis Valavanis; Aristotelis Chatziioannou (BIBE, 2015)

Redesigning EHRs and Clinical Decision Support Systems for the Precision Medicine Era. - Ilias Maglogiannis; Theodosios Goudas; Antonis Billiris; Haralampos Karanikas; Ioannis Valavanis; Olga Papadodima; Georgia Kontogianni; Aristotelis Chatziioannou (EANN Workshops, 2015)

A Novel Image Analysis Methodology for the Evaluation of Angiogenesis in Matrigel Assays and Screening of Angiogenesis-Modulating Compounds. - Ioannis Valavanis; Theodosios Goudas; Maria Michailidou; Ilias Maglogiannis; Heleni Loutrari; Aristotelis Chatziioannou (AIAI, 2015)

Exploring Robust Diagnostic Signatures for Cutaneous Melanoma Utilizing Genetic and Imaging Data. - Ioannis Valavanis; Ilias Maglogiannis; Aristotelis A. Chatziioannou (IEEE J. Biomed. Health Informatics, 2015)

Integrative Bioinformatic Analysis of a Greek Epidemiological Cohort Provides Insight into the Pathogenesis of Primary Cutaneous Melanoma. - Georgia Kontogianni; Olga Papadodima; Ilias Maglogiannis; Konstantina Frangia-Tsivou; Aristotelis Chatziioannou (AIAI, 2016)

Analyzing and Visualizing Genomic Complexity for the Derivation of the Emergent Molecular Networks. - Theodoros Koutsandreas; Ilona Binenbaum; Eleftherios Pilalis; Ioannis Valavanis; Olga Papadodima; Aristotelis Chatziioannou (Int. J. Monit. Surveillance Technol. Res., 2016)

Combining Pathway Analysis and Supervised Machine Learning for the Functional Classification of Single-Cell Transcriptomic Data. - Theodoris Koutsandreas; Ajdini Bajram; Chara Mastrokalou; Eleftherios Pilalis; Aristotelis Chatziioannou; Ilias Maglogiannis (BIBE, 2019)

An Integrated Platform for Skin Cancer Heterogenous and Multilayered Data Management. - Ilias Maglogiannis; Georgia Kontogianni; Olga Papadodima; Haralampos Karanikas; Antonis Billiris; Aristotelis Chatziioannou (J. Medical Syst., 2021)

Deep Learning Algorithms for Early Diagnosis of Acute Lymphoblastic Leukemia. - Dimitris Papaioannou; Ioannis Christou; Nikos Anagnou; Aristotelis Chatziioannou (CoRR, 2024)