IRaPPA: information retrieval based integration of biophysical models for protein assembly selection. - Iain H. Moal; Didier Barradas-Bautista; Brian Jiménez-García; Mieczyslaw Torchala; Arjan van der Velde; Thom Vreven; Zhiping Weng; Paul A. Bates; Juan Fernández-Recio (Bioinform., 2017)

Delineation of chromatin states and transcription factor binding in mouse and tools for large-scale data integration - Arjan van der Velde (2019)

Factorbook: an updated catalog of transcription factor motifs and candidate regulatory motif sites. - Henry E. Pratt; Gregory R. Andrews; Nishigandha Phalke; Jack D. Huey; Michael J. Purcaro; Arjan van der Velde; Jill Moore; Zhiping Weng (Nucleic Acids Res., 2022)