Temporal and spatial evolution of grey matter atrophy in primary progressive multiple sclerosis. - Arman Eshaghi; Benedetta Bodini; Gerard R. Ridgway; Daniel García-Lorenzo; Daniel J. Tozer; Mohammad Ali Sahraian; Alan J. Thompson; Olga Ciccarelli (NeuroImage, 2014)

Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in Python. 0.12.0-rc1. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher Burns 002; Erik Ziegler; Basile Pinsard; Cindee M. Madison; Michael L. Waskom; David Gage Ellis; Dav Clark; Michael Dayan; Alexandre Manhães-Savio; Michael Philipp Notter; et al. (Zenodo, 2016)

A Vertex Clustering Model for Disease Progression: Application to Cortical Thickness Images. - Razvan V. Marinescu; Arman Eshaghi; Marco Lorenzi; Alexandra L. Young; Neil P. Oxtoby; Sara Garbarino; Timothy J. Shakespeare; Sebastian J. Crutch; Daniel C. Alexander (IPMI, 2017)

Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in Python. 0.13.0. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher Burns 002; Erik Ziegler; Basile Pinsard; Cindee M. Madison; Michael L. Waskom; David Gage Ellis; Dav Clark; Jason Wong; Michael Dayan; Alexandre Manhães-Savio; et al. (Zenodo, 2017)

Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in Python. 0.13.1. - Krzysztof J. Gorgolewski; Oscar Esteban; David Gage Ellis; Michael Philipp Notter; Erik Ziegler; Hans J. Johnson; Carlo Hämäläinen; Benjamin Yvernault; Christopher Burns 002; Alexandre Manhães-Savio; Dorota Jarecka; Christopher J. Markiewicz; et al. (Zenodo, 2017)

nipy/nipype: 0.14.0-rc1. - Krzysztof J. Gorgolewski; Oscar Esteban; David Gage Ellis; Michael Philipp Notter; Erik Ziegler; Hans J. Johnson; Carlo Hämäläinen; Benjamin Yvernault; Christopher Burns 002; Alexandre Manhães-Savio; Dorota Jarecka; Christopher J. Markiewicz; et al. (Zenodo, 2017)

nipy/nipype: 0.14.0-rc1. - Krzysztof J. Gorgolewski; Oscar Esteban; David Gage Ellis; Michael Philipp Notter; Erik Ziegler; Hans J. Johnson; Carlo Hämäläinen; Benjamin Yvernault; Christopher Burns 002; Alexandre Manhães-Savio; Dorota Jarecka; Christopher J. Markiewicz; et al. (Zenodo, 2017)

nipy/nipype: 0.14.0. - Krzysztof J. Gorgolewski; Oscar Esteban; David Gage Ellis; Michael Philipp Notter; Erik Ziegler; Hans J. Johnson; Carlo Hämäläinen; Benjamin Yvernault; Christopher J. Markiewicz; Christopher Burns 002; Alexandre Manhães-Savio; Dorota Jarecka; et al. (Zenodo, 2017)

nipy/nipype: Nipype - v1.0.0. - Krzysztof J. Gorgolewski; Oscar Esteban; Erik Ziegler; Michael Philipp Notter; Christopher Burns 002; David Gage Ellis; Hans J. Johnson; Alexandre Manhães-Savio; Carlo Hämäläinen; Dorota Jarecka; Benjamin Yvernault; Christopher J. Markiewicz; et al. (Zenodo, 2018)

nipy/nipype: 1.0.1. - Krzysztof J. Gorgolewski; Oscar Esteban; Erik Ziegler; David Gage Ellis; Michael Philipp Notter; Christopher J. Markiewicz; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Dorota Jarecka; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.0.2. - Krzysztof J. Gorgolewski; Oscar Esteban; Erik Ziegler; David Gage Ellis; Christopher J. Markiewicz; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Dorota Jarecka; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: Nipype 1.0.3. - Krzysztof J. Gorgolewski; Oscar Esteban; Erik Ziegler; Christopher J. Markiewicz; David Gage Ellis; Michael Philipp Notter; Dorota Jarecka; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.0.4. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Michael Philipp Notter; Dorota Jarecka; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.0.4. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Michael Philipp Notter; Dorota Jarecka; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: Nipype 1.1.0. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Michael Philipp Notter; Dorota Jarecka; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.1.1. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Michael Philipp Notter; Hans J. Johnson; Dorota Jarecka; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.1.2. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Michael Philipp Notter; Hans J. Johnson; Dorota Jarecka; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.1.3. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.1.4. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hamalainen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.1.5. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.1.6. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.1.7. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

BrainPainter: A Software for the Visualisation of Brain Structures, Biomarkers and Associated Pathological Processes. - Razvan V. Marinescu; Arman Eshaghi; Daniel C. Alexander; Polina Golland (MBIA/MFCA@MICCAI, 2019)

Disease Knowledge Transfer Across Neurodegenerative Diseases. - Razvan V. Marinescu; Marco Lorenzi; Stefano B. Blumberg; Alexandra L. Young; Pere Planell-Morell; Neil P. Oxtoby; Arman Eshaghi; Keir X. Yong; Sebastian J. Crutch; Polina Golland; Daniel C. Alexander (MICCAI (2), 2019)

Disease Knowledge Transfer across Neurodegenerative Diseases. - Razvan V. Marinescu; Marco Lorenzi; Stefano B. Blumberg; Alexandra L. Young; Pere P. Morell; Neil P. Oxtoby; Arman Eshaghi; Keir X. Yong; Sebastian J. Crutch; Daniel C. Alexander (CoRR, 2019)

DIVE: A spatiotemporal progression model of brain pathology in neurodegenerative disorders. - Razvan V. Marinescu; Arman Eshaghi; Marco Lorenzi; Alexandra L. Young; Neil P. Oxtoby; Sara Garbarino; Sebastian J. Crutch; Daniel C. Alexander (NeuroImage, 2019)

nipy/nipype: 1.1.8. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

nipy/nipype: 1.1.9. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

nipy/nipype: 1.2.0. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

nipy/nipype: 1.2.1. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Hans J. Johnson; Michael Philipp Notter; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

nipy/nipype: 1.2.3. - Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Hans J. Johnson; Michael Philipp Notter; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; Taylor Salo; et al. (Zenodo, 2019)

nipy/nipype: 1.2.2. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Hans J. Johnson; Michael Philipp Notter; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

nipy/nipype: 1.2.2. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Hans J. Johnson; Michael Philipp Notter; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

nipy/nipype: 1.3.0-rc1. - Oscar Esteban; Christopher J. Markiewicz; Dorota Jarecka; Erik Ziegler; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Michael Philipp Notter; Benjamin Yvernault; David Gage Ellis; Taylor Salo; et al. (Zenodo, 2019)

nipy/nipype: 1.3.0. - Oscar Esteban; Christopher J. Markiewicz; Dorota Jarecka; Erik Ziegler; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Michael Philipp Notter; Benjamin Yvernault; David Gage Ellis; Taylor Salo; et al. (Zenodo, 2019)

nipy/nipype: 1.4.0. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Hans J. Johnson; Erik Ziegler; Alexandre Manhães-Savio; Dorota Jarecka; David Gage Ellis; Benjamin Yvernault; Carlo Hämäläinen; Michael Philipp Notter; Taylor Salo; et al. (Zenodo, 2019)

nipy/nipype: 1.4.1. - Oscar Esteban; Christopher J. Markiewicz; Hans J. Johnson; Erik Ziegler; Alexandre Manhães-Savio; Dorota Jarecka; Christopher Burns 002; David Gage Ellis; Carlo Hämäläinen; Michael Philipp Notter; Benjamin Yvernault; Taylor Salo; et al. (Zenodo, 2020)

nipy/nipype: 1.4.2. - Oscar Esteban; Christopher J. Markiewicz; Hans J. Johnson; Erik Ziegler; Alexandre Manhães-Savio; Dorota Jarecka; Christopher Burns 002; David Gage Ellis; Carlo Hämäläinen; Michael Philipp Notter; Benjamin Yvernault; Taylor Salo; et al. (Zenodo, 2020)

nipy/nipype: 1.5.0. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2020)

nipy/nipype: 1.5.1. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2020)

Ordinal SuStaIn: Subtype and Stage Inference for Clinical Scores, Visual Ratings, and Other Ordinal Data. - Alexandra L. Young; Jacob W. Vogel; Leon M. Aksman; Peter A. Wijeratne; Arman Eshaghi; Neil P. Oxtoby; Steven C. R. Williams; Daniel C. Alexander (Frontiers Artif. Intell., 2021)

pySuStaIn: A Python implementation of the Subtype and Stage Inference algorithm. - Leon M. Aksman; Peter A. Wijeratne; Neil P. Oxtoby; Arman Eshaghi; Cameron Shand; André Altmann; Daniel C. Alexander; Alexandra L. Young (SoftwareX, 2021)

nipy/nipype: 1.7.0. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2021)

An efficient semi-supervised quality control system trained using physics-based MRI-artefact generators and adversarial training. - Daniele Ravì; Frederik Barkhof; Daniel C. Alexander; Geoffrey J. M. Parker; Arman Eshaghi (CoRR, 2022)

nipy/nipype: 1.7.1. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2022)

nipy/nipype: 1.8.0. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2022)

nipy/nipype: 1.8.1. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2022)

nipy/nipype: 1.8.3. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2022)

DeepBrainPrint: A Novel Contrastive Framework for Brain MRI Re-Identification. - Lemuel Puglisi; Arman Eshaghi; Geoff J. M. Parker; Frederik Barkhof; Daniel C. Alexander; Daniele Ravì (MIDL, 2023)

Quantifying White Matter Hyperintensity and Brain Volumes in Heterogeneous Clinical and Low-Field Portable MRI. - Pablo Laso; Stefano Cerri; Annabel Sorby-Adams; Jennifer Guo; Farrah Mateen; Philipp Goebl; Jiaming Wu; Peirong Liu; Hongwei Bran Li; Sean I. Young; Benjamin Billot; Oula Puonti; et al. (ISBI, 2024)

An efficient semi-supervised quality control system trained using physics-based MRI-artefact generators and adversarial training. - Daniele Ravì; Frederik Barkhof; Daniel C. Alexander; Lemuel Puglisi; Geoffrey J. M. Parker; Arman Eshaghi (Medical Image Anal., 2024)