An alignment-free approach to cluster proteins using frequency of conserved k-mers. - Armen Abnousi; Shira L. Broschat; Ananth Kalyanaraman (BCB, 2015)

Clustering of Large-Scale Protein Datasets. - Armen Abnousi (2017)

Alignment-free clustering of large data sets of unannotated protein conserved regions using minhashing. - Armen Abnousi; Shira L. Broschat; Ananth Kalyanaraman (BMC Bioinform., 2018)

MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments. - Ivan Juric; Miao Yu; Armen Abnousi; Ramya Raviram; Rongxin Fang; Yuan Zhao; Yan-Xiao Zhang; Yunjiang Qiu; Yuchen Yang; Yun Li; Bing Ren; Ming Hu 001 (PLoS Comput. Biol., 2019)

A systematic evaluation of Hi-C data enhancement methods for enhancing PLAC-seq and HiChIP data. - Le Huang; Yuchen Yang; Gang Li 034; Minzhi Jiang; Jia Wen; Armen Abnousi; Jonathan D. Rosen; Ming Hu 001; Yun Li (Briefings Bioinform., 2022)