BioXSD: the common data-exchange format for everyday bioinformatics web services. - Matús Kalas; Pål Puntervoll; Alexandre Joseph; Edita Bartaseviciute; Armin Töpfer; Prabakar Venkataraman; Steve Pettifer; Jan Christian Bryne; Jon C. Ison; Christophe Blanchet; Kristoffer Rapacki; Inge Jonassen (Bioinform., 2010)

Probing of viral diversity by global haplotype prediction. - Armin Töpfer; Francesca Di Giallonardo; Karin J. Metzner; Huldrych F. Günthard; Niko Beerenwinkel (ICCABS, 2013)

Probabilistic Inference of Viral Quasispecies Subject to Recombination. - Armin Töpfer; Osvaldo Zagordi; Sandhya Prabhakaran; Volker Roth 001; Eran Halperin; Niko Beerenwinkel (J. Comput. Biol., 2013)

Viral quasispecies assembly from paired-end reads. - Armin Töpfer; Niko Beerenwinkel (ICCABS, 2014)

Challenges in RNA virus bioinformatics. - Manja Marz; Niko Beerenwinkel; Christian Drosten; Markus Fricke; Dmitrij Frishman; Ivo L. Hofacker; Dieter Hoffmann; Martin Middendorf; Thomas Rattei; Peter F. Stadler; Armin Töpfer (Bioinform., 2014)

Viral Quasispecies Assembly via Maximal Clique Enumeration. - Armin Töpfer; Tobias Marschall; Rowena A. Bull; Fabio Luciani; Alexander Schönhuth; Niko Beerenwinkel (PLoS Comput. Biol., 2014)

Knowledge distillation for fast and accurate DNA sequence correction. - Anastasiya Belyaeva; Joel Shor; Daniel E. Cook; Kishwar Shafin; Daniel Liu; Armin Töpfer; Aaron M. Wenger; William J. Rowell; Howard Yang; Alexey Kolesnikov; Cory Y. McLean; Maria Nattestad; et al. (CoRR, 2022)