SnoopCGH: software for visualizing comparative genomic hybridization data. - Jacob Almagro-Garcia; Magnus Manske; Celine Carret; Susana G. Campino; Sarah Auburn; Bronwyn L. MacInnis; Gareth Maslen; Arnab Pain; Christopher I. Newbold; Dominic Kwiatkowski; Taane G. Clark (Bioinform., 2009)

READSCAN: a fast and scalable pathogen discovery program with accurate genome relative abundance estimation. - Raeece Naeem; Mamoon Rashid 003; Arnab Pain (Bioinform., 2013)

SVAMP: sequence variation analysis, maps and phylogeny. - Raeece Naeem; Lailatul Hidayah; Mark D. Preston; Taane G. Clark; Arnab Pain (Bioinform., 2014)

A promoter-level mammalian expression atlas. - Fantom Consortium; RIKEN PMII; RIKEN CLST (DGT); Alistair R. R. Forrest; Hideya Kawaji; Michael Rehli; J. Kenneth Baillie; Michiel J. L. de Hoon; Vanja Haberle; Timo Lassmann; Ivan V. Kulakovskiy; Marina Lizio; et al. (Nat., 2014)

PhyTB: Phylogenetic tree visualisation and sample positioning for M. tuberculosis. - Ernest D. Benavente; Francesc Coll; Nick Furnham; Ruth McNerney; Judith R. Glynn; Susana G. Campino; Arnab Pain; Fady R. Mohareb; Taane G. Clark (BMC Bioinform., 2015)