Reconstruction and analysis of genome-scale metabolic model of a photosynthetic bacterium. - Arnau Montagud; Emilio Navarro; Pedro Fernández de Córdoba; Javier F. Urchueguía; Kiran Raosaheb Patil (BMC Syst. Biol., 2010)

Automation on the Generation of Genome-Scale Metabolic Models. - R. Reyes; Daniel Gamermann; Arnau Montagud; David Fuente; Julián Triana; Javier F. Urchueguía Schölzel; Pedro Fernández de Córdoba (J. Comput. Biol., 2012)

New Approach for Phylogenetic Tree Recovery Based on Genome-Scale Metabolic Networks. - Daniel Gamermann; Arnau Montagud; J. Alberto Conejero; Javier F. Urchueguía; Pedro Fernández de Córdoba (J. Comput. Biol., 2014)

Conceptual and computational framework for logical modelling of biological networks deregulated in diseases. - Arnau Montagud; Pauline Traynard; Loredana Martignetti; Eric Bonnet; Emmanuel Barillot; Andrei Yu. Zinovyev; Laurence Calzone (Briefings Bioinform., 2019)

PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling. - Gaëlle Letort; Arnau Montagud; Gautier Stoll; Randy W. Heiland; Emmanuel Barillot; Paul Macklin; Andrei Yu. Zinovyev; Laurence Calzone (Bioinform., 2019)

INforE: Interactive Cross-platform Analytics for Everyone. - Nikos Giatrakos; David Arnu; Theodoros Bitsakis; Antonios Deligiannakis; Minos N. Garofalakis; Ralf Klinkenberg; Aris Konidaris; Antonis Kontaxakis; Yannis Kotidis; Vasilis Samoladas; Alkis Simitsis; George Stamatakis 002; et al. (CIKM, 2020)

BioFVM-X: An MPI+OpenMP 3-D Simulator for Biological Systems. - Gaurav Saxena; Miguel Ponce de Leon; Arnau Montagud; David Vicente Dorca; Alfonso Valencia (CMSB, 2021)

Parallel model exploration for tumor treatment simulations. - Charilaos Akasiadis; Miguel Ponce de Leon; Arnau Montagud; Evangelos Michelioudakis; Alexia Atsidakou; Elias Alevizos; Alexander Artikis; Alfonso Valencia; Georgios Paliouras (Comput. Intell., 2022)

Lessons Learned from a Performance Analysis and Optimization of a Multiscale Cellular Simulation. - Marc Clascà; Marta Garcia-Gasulla; Arnau Montagud; José Carbonell-Caballero; Alfonso Valencia (PASC, 2023)