HomoMINT: an inferred human network based on orthology mapping of protein interactions discovered in model organisms. - Maria Persico; Arnaud Céol; Caius Gavrila; Robert Hoffmann; Arnaldo Florio; Gianni Cesareni (BMC Bioinform., 2005)

DOMINO: a database of domain-peptide interactions. - Arnaud Céol; Andrew Chatr-aryamontri; Elena Santonico; Roberto Sacco; Luisa Castagnoli; Gianni Cesareni (Nucleic Acids Res., 2007)

MINT: the Molecular INTeraction database. - Andrew Chatr-aryamontri; Arnaud Céol; Luisa Montecchi-Palazzi; Giuliano Nardelli; Maria Victoria Schneider; Luisa Castagnoli; Gianni Cesareni (Nucleic Acids Res., 2007)

VirusMINT: a viral protein interaction database. - Andrew Chatr-aryamontri; Arnaud Céol; Daniele Peluso; Aurelio Nardozza; Simona Panni; Francesca Sacco; Michele Tinti; Alex Smolyar; Luisa Castagnoli; Marc Vidal; Michael E. Cusick; Gianni Cesareni (Nucleic Acids Res., 2009)

MINT, the molecular interaction database: 2009 update. - Arnaud Céol; Andrew Chatr-aryamontri; Luana Licata; Daniele Peluso; Leonardo Briganti; Livia Perfetto; Luisa Castagnoli; Gianni Cesareni (Nucleic Acids Res., 2010)

3did: identification and classification of domain-based interactions of known three-dimensional structure. - Amelie Stein; Arnaud Céol; Patrick Aloy (Nucleic Acids Res., 2011)

NetAligner - a network alignment server to compare complexes, pathways and whole interactomes. - Roland A. Pache; Arnaud Céol; Patrick Aloy (Nucleic Acids Res., 2012)

SMITH: a LIMS for handling next-generation sequencing workflows. - Francesco Venco; Yuriy Vaskin; Arnaud Céol; Heiko Müller 003 (BMC Bioinform., 2014)

AnnotateGenomicRegions: a web application. - Luca Zammataro; Rita DeMolfetta; Gabriele Bucci; Arnaud Céol; Heiko Müller 003 (BMC Bioinform., 2014)

3did: a catalog of domain-based interactions of known three-dimensional structure. - Roberto Mosca 002; Arnaud Céol; Amelie Stein; Roger Olivella; Patrick Aloy (Nucleic Acids Res., 2014)

The MI bundle: enabling network and structural biology in genome visualization tools. - Arnaud Céol; Heiko Müller 003 (Bioinform., 2015)

Genome and network visualization facilitates the analyses of the effects of drugs and mutations on protein-protein and drug-protein networks. - Arnaud Céol; Lisette G. G. C. Verhoef; Mark Wade; Heiko Müller 003 (BMC Bioinform., 2016)

LowMACA: exploiting protein family analysis for the identification of rare driver mutations in cancer. - Giorgio E. M. Melloni; Stefano de Pretis; Laura Riva; Mattia Pelizzola; Arnaud Céol; Jole Costanza; Heiko Müller 003; Luca Zammataro (BMC Bioinform., 2016)

Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions. - M. Sivade Dumousseau; Diego Alonso-López; Mais G. Ammari; Glyn Bradley; Nancy H. Campbell; Arnaud Céol; Gianni Cesareni; Colin W. Combe; Javier De Las Rivas; Noemi del-Toro; Joshua Heimbach; Henning Hermjakob; et al. (BMC Bioinform., 2018)

The 2017 Network Tools and Applications in Biology (NETTAB) workshop: aims, topics and outcomes. - Paolo Romano 001; Arnaud Céol; Andreas Dräger; Antonino Fiannaca; Rosalba Giugno; Massimo La Rosa; Luciano Milanesi; Ulrich Pfeffer; Riccardo Rizzo; Soo-Yong Shin; Junfeng Xia; Alfonso Urso (BMC Bioinform., 2019)

Search and comparison of (epi)genomic feature patterns in multiple genome browser tracks. - Arnaud Céol; Piero Montanari; Ilaria Bartolini; Stefano Ceri; Paolo Ciaccia; Marco Patella; Marco Masseroli (BMC Bioinform., 2020)

TMBleR: a bioinformatic tool to optimize TMB estimation and predictive power. - Laura Fancello; Alessandro Guida; Gianmaria Frige; Arnaud Céol; Gabriele Babini; Giovanni Luca Scaglione; Mario Zanfardino; Tommaso Mazza; Lorenzo Ferrando; Pier Giuseppe Pelicci; Luca Mazzarella (Bioinform., 2022)