GeneDB: a resource for prokaryotic and eukaryotic organisms. - Christiane Hertz-Fowler; Chris S. Peacock; Valerie Wood; Martin Aslett; Arnaud Kerhornou; Paul Mooney; Adrian Tivey; Matthew Berriman; Neil Hall; Kim Rutherford; Julian Parkhill; Alasdair C. Ivens; et al. (Nucleic Acids Res., 2004)

BioMoby web services to support clustering of co-regulated genes based on similarity of promoter configurations. - Arnaud Kerhornou; Roderic Guigó (Bioinform., 2007)

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. - Toshiaki Katayama; Kazuharu Arakawa; Mitsuteru Nakao; Keiichiro Ono; Kiyoko F. Aoki-Kinoshita; Yasunori Yamamoto; Atsuko Yamaguchi; Shuichi Kawashima; Hong-Woo Chun; Jan Aerts; Bruno Aranda; Lord H. Barboza; et al. (J. Biomed. Semant., 2010)

Ensembl Genomes: Extending Ensembl across the taxonomic space. - Paul J. Kersey; Daniel Lawson; Ewan Birney; Paul S. Derwent; Matthias Haimel; Javier Herrero; Stephen Keenan; Arnaud Kerhornou; Gautier Koscielny; Andreas Kähäri; Rhoda Kinsella; Eugene Kulesha; et al. (Nucleic Acids Res., 2010)

Ensembl BioMarts: a hub for data retrieval across taxonomic space. - Rhoda Kinsella; Andreas Kähäri; Syed Haider; Jorge Zamora; Glenn Proctor; Giulietta Spudich; Jeff Almeida-King; Daniel M. Staines; Paul S. Derwent; Arnaud Kerhornou; Paul J. Kersey; Paul Flicek (Database J. Biol. Databases Curation, 2011)

Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species. - Paul J. Kersey; Daniel M. Staines; Daniel Lawson; Eugene Kulesha; Paul S. Derwent; Jay C. Humphrey; Daniel S. T. Hughes; Stephen Keenan; Arnaud Kerhornou; Gautier Koscielny; Nicholas Langridge; Mark D. McDowall; et al. (Nucleic Acids Res., 2012)

Ensembl Genomes 2013: scaling up access to genome-wide data. - Paul Julian Kersey; James E. Allen; Mikkel B. Christensen; Paul Davis 001; Lee J. Falin; Christoph Grabmueller; Daniel Seth Toney Hughes; Jay C. Humphrey; Arnaud Kerhornou; Julia Khobova; Nicholas Langridge; Mark D. McDowall; et al. (Nucleic Acids Res., 2014)

Gramene 2013: comparative plant genomics resources. - Marcela K. Monaco; Joshua C. Stein; Sushma Naithani; Sharon Wei; Palitha Dharmawardhana; Sunita Kumari; Vindhya Amarasinghe; Ken Youens-Clark; James Thomason; Justin Preece; Shiran Pasternak; Andrew Olson; et al. (Nucleic Acids Res., 2014)

The BioMart community portal: an innovative alternative to large, centralized data repositories. - Damian Smedley; Syed Haider; Steffen Durinck; Luca Pandini; Paolo Provero; James E. Allen; Olivier Arnaiz; Mohammad Hamza Awedh; Richard A. Baldock; Giulia Barbiera; Philippe Bardou; Tim Beck; et al. (Nucleic Acids Res., 2015)

Ensembl Genomes 2016: more genomes, more complexity. - Paul Julian Kersey; James E. Allen; Irina M. Armean; Sanjay Boddu; Bruce J. Bolt; Denise Carvalho-Silva; Mikkel B. Christensen; Paul Davis 001; Lee J. Falin; Christoph Grabmueller; Jay C. Humphrey; Arnaud Kerhornou; et al. (Nucleic Acids Res., 2016)

Gramene 2016: comparative plant genomics and pathway resources. - Marcela K. Tello-Ruiz; Joshua C. Stein; Sharon Wei; Justin Preece; Andrew Olson; Sushma Naithani; Vindhya Amarasinghe; Palitha Dharmawardhana; Yinping Jiao; Joseph Mulvaney; Sunita Kumari; Kapeel Chougule; et al. (Nucleic Acids Res., 2016)

UniProt: the universal protein knowledgebase in 2021. - Alex Bateman; Maria Jesus Martin; Sandra E. Orchard; Michele Magrane; Rahat Agivetova; Shadab Ahmad; Emanuele Alpi; Emily H. Bowler-Barnett; Ramona Britto; Borisas Bursteinas; Hema Bye-A-Jee; Ray Coetzee; et al. (Nucleic Acids Res., 2021)

Rhea, the reaction knowledgebase in 2022. - Parit Bansal; Anne Morgat; Kristian B. Axelsen; Venkatesh Muthukrishnan; Elisabeth Coudert; Lucila Aimo; Nevila Hyka-Nouspikel; Elisabeth Gasteiger; Arnaud Kerhornou; Teresa Batista Neto; Monica Pozzato; Marie-Claude Blatter; et al. (Nucleic Acids Res., 2022)

Annotation of biologically relevant ligands in UniProtKB using ChEBI. - Elisabeth Coudert; Sebastien Gehant; Edouard De Castro; Monica Pozzato; Delphine Baratin; Teresa Batista Neto; Christian J. A. Sigrist; Nicole Redaschi; Alan J. Bridge; Lucila Aimo; Ghislaine Argoud-Puy; Andrea H. Auchincloss; et al. (Bioinform., 2023)