Rekonstruktion phylogenetischer Bäume mit Hilfe von Varianten der Vier-Punkt-Bedingung. - Arndt von Haeseler (1988)

Simulating efficiently the evolution of DNA sequences. - M. Schoniger; Arndt von Haeseler (Comput. Appl. Biosci., 1995)

Modeling the Polymerase Chain Reaction. - Gunter Weiss; Arndt von Haeseler (J. Comput. Biol., 1995)

Towards Integration of Multiple Alignment and Phylogenetic Tree Construction. - Martin Vingron; Arndt von Haeseler (J. Comput. Biol., 1997)

Evolution of DNA or Amino Acid Sequences with Dependent Sites. - Arndt von Haeseler; M. Schoniger (J. Comput. Biol., 1998)

Compilation of human mtDNA control region sequences. - Oliva Handt; Sonja Meyer 002; Arndt von Haeseler (Nucleic Acids Res., 1998)

HvrBase: compilation of mtDNA control region sequences from primates. - Florian Burckhardt; Arndt von Haeseler; Sonja Meyer 002 (Nucleic Acids Res., 1999)

C–>U editing of apolipoprotein B mRNA in marsupials: identification and characterisation of APOBEC-1 from the American opossum Monodelphus domestica. - T. Fujino; N. Navaratnam; A. Jarmuz; Arndt von Haeseler; James Scott (Nucleic Acids Res., 1999)

Can One Estimate Distances from Pairwise Sequence Alignments? - Roland Fleißner; Dirk Metzler; Arndt von Haeseler (German Conference on Bioinformatics, 2000)

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. - Heiko A. Schmidt; Korbinian Strimmer; Martin Vingron; Arndt von Haeseler (Bioinform., 2002)

Molecular phylogenetics: parallelized parameter estimation and quartet puzzling. - Heiko A. Schmidt; Ekkehard Petzold; Martin Vingron; Arndt von Haeseler (J. Parallel Distributed Comput., 2003)

PhyNav: A Novel Approach to Reconstruct Large Phylogenies. - Le Sy Vinh; Heiko A. Schmidt; Arndt von Haeseler (GfKl, 2004)

pIQPNNI: parallel reconstruction of large maximum likelihood phylogenies. - Bui Quang Minh; Le Sy Vinh; Arndt von Haeseler; Heiko A. Schmidt (Bioinform., 2005)

Shortest triplet clustering: reconstructing large phylogenies using representative sets. - Le Sy Vinh; Arndt von Haeseler (BMC Bioinform., 2005)

In silico sequence evolution with site-specific interactions along phylogenetic trees. - Tanja Gesell; Arndt von Haeseler (Bioinform., 2006)

HvrBase++: a phylogenetic database for primate species. - Jochen Kohl; Ingo Paulsen; Thomas Laubach; Achim Radtke; Arndt von Haeseler (Nucleic Acids Res., 2006)

INVHOGEN: a database of homologous invertebrate genes. - Ingo Paulsen; Arndt von Haeseler (Nucleic Acids Res., 2006)

TreeSnatcher: coding trees from images. - Thomas Laubach; Arndt von Haeseler (Bioinform., 2007)

pIPHULA - parallel inference of population parameters using a likelihood approach. - Heiko A. Schmidt; Arndt von Haeseler; Jutta Buschbom (Bioinform., 2007)

Knowledge Acquisition Focused Cooperative Development of Bio-ontologies - A Case Study with BIO2Me. - Dominic Mainz; Ingo Paulsen; Indra Mainz; Katrin Weller; Jochen Kohl; Arndt von Haeseler (BIRD, 2008)

An Exact Algorithm for the Geodesic Distance between Phylogenetic Trees. - Anne Kupczok; Arndt von Haeseler; Steffen Klaere (J. Comput. Biol., 2008)

Comment on 'A congruence index for testing topological similarity between trees'. - Anne Kupczok; Arndt von Haeseler (Bioinform., 2009)

Budgeted Phylogenetic Diversity on Circular Split Systems. - Bui Quang Minh; Fabio Pardi; Steffen Klaere; Arndt von Haeseler (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

ACOPHY: A Simple and General Ant Colony Optimization Approach for Phylogenetic Tree Reconstruction. - Huy Q. Dinh; Bui Quang Minh; Hoang Xuan Huan; Arndt von Haeseler (ANTS Conference, 2010)

Accuracy of phylogeny reconstruction methods combining overlapping gene data sets. - Anne Kupczok; Heiko A. Schmidt; Arndt von Haeseler (Algorithms Mol. Biol., 2010)

FACT: Functional annotation transfer between proteins with similar feature architectures. - Tina Koestler; Arndt von Haeseler; Ingo Ebersberger (BMC Bioinform., 2010)

MASon: Million Alignments in Seconds - A Platform Independent Pairwise Sequence Alignment Library for next Generation Sequencing Data. - Philipp Rescheneder; Arndt von Haeseler; Fritz J. Sedlazeck (BIOINFORMATICS, 2012)

On the group theoretical background of assigning stepwise mutations onto phylogenies. - Mareike Fischer 001; Steffen Klaere; Minh Anh Nguyen; Arndt von Haeseler (Algorithms Mol. Biol., 2012)

TreeSnatcher plus: capturing phylogenetic trees from images. - Thomas Laubach; Arndt von Haeseler; Martin J. Lercher (BMC Bioinform., 2012)

NextGenMap: fast and accurate read mapping in highly polymorphic genomes. - Fritz J. Sedlazeck; Philipp Rescheneder; Arndt von Haeseler (Bioinform., 2013)

Consequences of Common Topological Rearrangements for Partition Trees in Phylogenomic Inference. - Olga Chernomor; Bui Quang Minh; Arndt von Haeseler (J. Comput. Biol., 2015)

A new phylogenetic tree sampling method for maximum parsimony bootstrapping and proof-of-concept implementation. - Diep Thi Hoang; Le Sy Vinh; Tomás Flouri; Alexandros Stamatakis; Arndt von Haeseler; Bui Quang Minh (KSE, 2016)

W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis. - Jana Trifinopoulos; Lam-Tung Nguyen; Arndt von Haeseler; Bui Quang Minh (Nucleic Acids Res., 2016)

An Enumerative Combinatorics Model for Fragmentation Patterns in RNA Sequencing Provides Insights into Nonuniformity of the Expected Fragment Starting-Point and Coverage Profile. - Celine Prakash; Arndt von Haeseler (J. Comput. Biol., 2017)

TRUmiCount: correctly counting absolute numbers of molecules using unique molecular identifiers. - Florian G. Pflug; Arndt von Haeseler (Bioinform., 2018)

Quantification of experimentally induced nucleotide conversions in high-throughput sequencing datasets. - Tobias Neumann; Veronika A. Herzog; Matthias Muhar; Arndt von Haeseler; Johannes Zuber; Stefan L. Ameres; Philipp Rescheneder (BMC Bioinform., 2019)

InspectorCell: Finding Ground Truth in Multiplexed Microscopy Images. - Andre Gosselink; Tatsiana Hofer; Elvira Criado-Moronati; Arndt von Haeseler; Jutta Kollet (J. Open Source Softw., 2022)

SVhound: detection of regions that harbor yet undetected structural variation. - Luis F. Paulin; Muthuswamy Raveendran; R. Alan Harris; Jeffrey Rogers; Arndt von Haeseler; Fritz J. Sedlazeck (BMC Bioinform., 2023)

Neutral competition explains the clonal composition of neural organoids. - Florian G. Pflug; Simon Haendeler; Christopher Esk; Dominik Lindenhofer; Juergen A. Knoblich; Arndt von Haeseler (PLoS Comput. Biol., 2024)

Learning From an Artificial Neural Network in Phylogenetics. - Alina F. Leuchtenberger; Arndt von Haeseler (IEEE ACM Trans. Comput. Biol. Bioinform., 2024)