Genome annotation with PSI-BLAST: Benchmark and application. - Arne Müller; Robert M. MacCallum; Michael J. E. Sternberg (German Conference on Bioinformatics, 1999)

Structural annotation of the human genome. - Arne Müller; Michael J. E. Sternberg (German Conference on Bioinformatics, 2001)

3D-GENOMICS: a database to compare structural and functional annotations of proteins between sequenced genomes. - Keiran Fleming; Arne Müller; Robert M. MacCallum; Michael J. E. Sternberg (Nucleic Acids Res., 2004)

FunPlogs - A Serious Puzzle Mini-game for Learning Fundamental Programming Principles Using Visual Scripting. - Robin Horst; Ramtin Naraghi-Taghi-Off; Savina Diez; Tobias Uhmann; Arne Müller; Ralf Dörner 001 (ISVC (1), 2019)

KIcker: An Industrial Drive and Control Foosball System automated with Deep Reinforcement Learning. - Stefano De Blasi; Sebastian Klöser; Arne Müller; Robin Reuben; Fabian Sturm; Timo Zerrer (J. Intell. Robotic Syst., 2021)