Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements. - Scott L. Carter; Aron C. Eklund; Brigham H. Mecham; Isaac S. Kohane; Zoltan Szallasi (BMC Bioinform., 2005)

Jetset: selecting the optimal microarray probe set to represent a gene. - Qiyuan Li; Nicolai J. Birkbak; Balazs Györffy; Zoltan Szallasi; Aron C. Eklund (BMC Bioinform., 2011)

Consistent metagenes from cancer expression profiles yield agent specific predictors of chemotherapy response. - Qiyuan Li; Aron C. Eklund; Nicolai J. Birkbak; Christine Desmedt; Benjamin Haibe-Kains; Christos P. Sotiriou; W. Fraser Symmans; Lajos Pusztai; Søren Brunak; Andrea L. Richardson; Zoltan Szallasi (BMC Bioinform., 2011)

Strand Orientation Bias Detector to determine the probability of FFPE sequencing artifacts. - Miklos Diossy; Zsofia Sztupinszki; Marcin Krzystanek; Judit Börcsök; Aron C. Eklund; István Csabai; Anders Gorm Pedersen; Zoltan Szallasi (Briefings Bioinform., 2021)