MMDB: Entrez's 3D structure database. - Aron Marchler-Bauer; Kenneth J. Addess; Colombe Chappey; Lewis Y. Geer; Thomas Madej; Yo Matsuo; Yanli Wang; Stephen H. Bryant (Nucleic Acids Res., 1999)

Domain size distributions can predict domain boundaries. - Sarah J. Wheelan; Aron Marchler-Bauer; Stephen H. Bryant (Bioinform., 2000)

MMDB: 3D structure data in Entrez. - Yanli Wang; Kenneth J. Addess; Lewis Y. Geer; Thomas Madej; Aron Marchler-Bauer; Diane Zimmerman; Stephen H. Bryant (Nucleic Acids Res., 2000)

CDD: a database of conserved domain alignments with links to domain three-dimensional structure. - Aron Marchler-Bauer; Anna R. Panchenko; Benjamin A. Shoemaker; Paul A. Thiessen; Lewis Y. Geer; Stephen H. Bryant (Nucleic Acids Res., 2002)

MMDB: Entrez's 3D-structure database. - Yanli Wang; John B. Anderson; Jie Chen 039; Lewis Y. Geer; Siqian He; David I. Hurwitz; Cynthia A. Liebert; Thomas Madej; Gabriele H. Marchler; Aron Marchler-Bauer; Anna R. Panchenko; Benjamin A. Shoemaker; et al. (Nucleic Acids Res., 2002)

MMDB: Entrez's 3D-structure database. - Jie Chen 039; John B. Anderson; Carol DeWeese-Scott; Natalie D. Fedorova; Lewis Y. Geer; Siqian He; David I. Hurwitz; John D. Jackson; Aviva R. Jacobs; Christopher J. Lanczycki; Cynthia A. Liebert; Chunlei Liu 002; et al. (Nucleic Acids Res., 2003)

CDD: a curated Entrez database of conserved domain alignments. - Aron Marchler-Bauer; John B. Anderson; Carol DeWeese-Scott; Natalie D. Fedorova; Lewis Y. Geer; Siqian He; David I. Hurwitz; John D. Jackson; Aviva R. Jacobs; Christopher J. Lanczycki; Cynthia A. Liebert; Chunlei Liu 002; et al. (Nucleic Acids Res., 2003)

CD-Search: protein domain annotations on the fly. - Aron Marchler-Bauer; Stephen H. Bryant (Nucleic Acids Res., 2004)

CDD: a Conserved Domain Database for protein classification. - Aron Marchler-Bauer; John B. Anderson; Praveen F. Cherukuri; Carol DeWeese-Scott; Lewis Y. Geer; Marc Gwadz; Siqian He; David I. Hurwitz; John D. Jackson; Zhaoxi Ke; Christopher J. Lanczycki; Cynthia A. Liebert; et al. (Nucleic Acids Res., 2005)

CDD: a conserved domain database for interactive domain family analysis. - Aron Marchler-Bauer; John B. Anderson; Myra K. Derbyshire; Carol DeWeese-Scott; Noreen R. Gonzales; Marc Gwadz; Luning Hao; Siqian He; David I. Hurwitz; John D. Jackson; Zhaoxi Ke; Dmitri M. Krylov; et al. (Nucleic Acids Res., 2007)

MMDB: annotating protein sequences with Entrez's 3D-structure database. - Yanli Wang; Kenneth J. Addess; Jie Chen 039; Lewis Y. Geer; Jane He; Siqian He; Shennan Lu; Thomas Madej; Aron Marchler-Bauer; Paul A. Thiessen; Naigong Zhang; Stephen H. Bryant (Nucleic Acids Res., 2007)

Knowledge-based expert systems and a proof-of-concept case study for multiple sequence alignment construction and analysis. - Mohamed Radhouene Aniba; Sophie Siguenza; Anne Friedrich; Frédéric Plewniak; Olivier Poch; Aron Marchler-Bauer; Julie Dawn Thompson (Briefings Bioinform., 2009)

CORAL: aligning conserved core regions across domain families. - Jessica H. Fong; Aron Marchler-Bauer (Bioinform., 2009)

CDD: specific functional annotation with the Conserved Domain Database. - Aron Marchler-Bauer; John B. Anderson; Farideh Chitsaz; Myra K. Derbyshire; Carol DeWeese-Scott; Jessica H. Fong; Lewis Y. Geer; Renata C. Geer; Noreen R. Gonzales; Marc Gwadz; Siqian He; David I. Hurwitz; et al. (Nucleic Acids Res., 2009)

The NCBI BioSystems database. - Lewis Y. Geer; Aron Marchler-Bauer; Renata C. Geer; Lianyi Han; Jane He; Siqian He; Chunlei Liu 002; Wenyao Shi; Stephen H. Bryant (Nucleic Acids Res., 2010)

Database resources of the National Center for Biotechnology Information. - Eric W. Sayers; Tanya Barrett; Dennis A. Benson; Evan Bolton; Stephen H. Bryant; Kathi Canese; Vyacheslav Chetvernin; Deanna M. Church; Michael DiCuccio; Scott Federhen; Michael Feolo; Lewis Y. Geer; et al. (Nucleic Acids Res., 2010)

Inferred Biomolecular Interaction Server - a web server to analyze and predict protein interacting partners and binding sites. - Benjamin A. Shoemaker; Dachuan Zhang; Ratna R. Thangudu; Manoj Tyagi; Jessica H. Fong; Aron Marchler-Bauer; Stephen H. Bryant; Tom Madej; Anna R. Panchenko (Nucleic Acids Res., 2010)

Automatic annotation of experimentally derived, evolutionarily conserved post-translational modifications onto multiple genomes. - Viswanadham Sridhara; Aron Marchler-Bauer; Stephen H. Bryant; Lewis Y. Geer (Database J. Biol. Databases Curation, 2011)

CDD: a Conserved Domain Database for the functional annotation of proteins. - Aron Marchler-Bauer; Shennan Lu; John B. Anderson; Farideh Chitsaz; Myra K. Derbyshire; Carol DeWeese-Scott; Jessica H. Fong; Lewis Y. Geer; Renata C. Geer; Noreen R. Gonzales; Marc Gwadz; David I. Hurwitz; et al. (Nucleic Acids Res., 2011)

Database resources of the National Center for Biotechnology Information. - Eric W. Sayers; Tanya Barrett; Dennis A. Benson; Evan Bolton; Stephen H. Bryant; Kathi Canese; Vyacheslav Chetvernin; Deanna M. Church; Michael DiCuccio; Scott Federhen; Michael Feolo; Ian M. Fingerman; et al. (Nucleic Acids Res., 2011)

Annotation of functional sites with the Conserved Domain Database. - Myra K. Derbyshire; Christopher J. Lanczycki; Stephen H. Bryant; Aron Marchler-Bauer (Database J. Biol. Databases Curation, 2012)

Automated hierarchical classification of protein domain subfamilies based on functionally-divergent residue signatures. - Andrew F. Neuwald; Christopher J. Lanczycki; Aron Marchler-Bauer (BMC Bioinform., 2012)

MMDB: 3D structures and macromolecular interactions. - Thomas Madej; Kenneth J. Addess; Jessica H. Fong; Lewis Y. Geer; Renata C. Geer; Christopher J. Lanczycki; Chunlei Liu 002; Shennan Lu; Aron Marchler-Bauer; Anna R. Panchenko; Jie Chen 039; Paul A. Thiessen; et al. (Nucleic Acids Res., 2012)

Database resources of the National Center for Biotechnology Information. - Eric W. Sayers; Tanya Barrett; Dennis A. Benson; Evan Bolton; Stephen H. Bryant; Kathi Canese; Vyacheslav Chetvernin; Deanna M. Church; Michael DiCuccio; Scott Federhen; Michael Feolo; Ian M. Fingerman; et al. (Nucleic Acids Res., 2012)

IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins. - Benjamin A. Shoemaker; Dachuan Zhang; Manoj Tyagi; Ratna R. Thangudu; Jessica H. Fong; Aron Marchler-Bauer; Stephen H. Bryant; Thomas Madej; Anna R. Panchenko (Nucleic Acids Res., 2012)

CDD: conserved domains and protein three-dimensional structure. - Aron Marchler-Bauer; Chanjuan Zheng; Farideh Chitsaz; Myra K. Derbyshire; Lewis Y. Geer; Renata C. Geer; Noreen R. Gonzales; Marc Gwadz; David I. Hurwitz; Christopher J. Lanczycki; Fu Lu; Shennan Lu; et al. (Nucleic Acids Res., 2013)

MMDB and VAST+: tracking structural similarities between macromolecular complexes. - Thomas Madej; Christopher J. Lanczycki; Dachuan Zhang; Paul A. Thiessen; Renata C. Geer; Aron Marchler-Bauer; Stephen H. Bryant (Nucleic Acids Res., 2014)

Improving the consistency of domain annotation within the Conserved Domain Database. - Myra K. Derbyshire; Noreen R. Gonzales; Shennan Lu; Jane He; Gabriele H. Marchler; Zhouxi Wang; Aron Marchler-Bauer (Database J. Biol. Databases Curation, 2015)

cddApp: a Cytoscape app for accessing the NCBI conserved domain database. - John H. Morris; Allan Wu; Roxanne A. Yamashita; Aron Marchler-Bauer; Thomas E. Ferrin (Bioinform., 2015)

CDD: NCBI's conserved domain database. - Aron Marchler-Bauer; Myra K. Derbyshire; Noreen R. Gonzales; Shennan Lu; Farideh Chitsaz; Lewis Y. Geer; Renata C. Geer; Jane He; Marc Gwadz; David I. Hurwitz; Christopher J. Lanczycki; Fu Lu; et al. (Nucleic Acids Res., 2015)

InterPro in 2017 - beyond protein family and domain annotations. - Robert D. Finn; Teresa K. Attwood; Patricia C. Babbitt; Alex Bateman; Peer Bork; Alan J. Bridge; Hsin-Yu Chang; Zsuzsanna Dosztányi; Sara El-Gebali; Matthew Fraser; Julian Gough; David Haft; et al. (Nucleic Acids Res., 2017)

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures. - Aron Marchler-Bauer; Bo Yu 016; Lianyi Han; Jane He; Christopher J. Lanczycki; Shennan Lu; Farideh Chitsaz; Myra K. Derbyshire; Renata C. Geer; Noreen R. Gonzales; Marc Gwadz; David I. Hurwitz; et al. (Nucleic Acids Res., 2017)

RefSeq: an update on prokaryotic genome annotation and curation. - Daniel H. Haft; Michael DiCuccio; Azat Badretdin; Vyacheslav Brover; Vyacheslav Chetvernin; Kathleen O'Neill; Wenjun Li; Farideh Chitsaz; Myra K. Derbyshire; Noreen R. Gonzales; Marc Gwadz; Fu Lu; et al. (Nucleic Acids Res., 2018)

PubMed Text Similarity Model and its application to curation efforts in the Conserved Domain Database. - Rezarta Islamaj Dogan; W. John Wilbur; Natalie Xie; Noreen R. Gonzales; Narmada Thanki; Roxanne A. Yamashita; Chanjuan Zheng; Aron Marchler-Bauer; Zhiyong Lu (Database J. Biol. Databases Curation, 2019)

InterPro in 2019: improving coverage, classification and access to protein sequence annotations. - Alex L. Mitchell; Teresa K. Attwood; Patricia C. Babbitt; Matthias Blum; Peer Bork; Alan J. Bridge; Shoshana D. Brown; Hsin-Yu Chang; Sara El-Gebali; Matthew Fraser; Julian Gough; David Haft; et al. (Nucleic Acids Res., 2019)

Database resources of the National Center for Biotechnology Information. - Eric W. Sayers; Richa Agarwala; Evan Bolton; J. Rodney Brister; Kathi Canese; Karen Clark; Ryan Connor; Nicolas Fiorini; Kathryn Funk; Timothy Hefferon; J. Bradley Holmes; Sunghwan Kim 002; et al. (Nucleic Acids Res., 2019)

Obtaining extremely large and accurate protein multiple sequence alignments from curated hierarchical alignments. - Andrew F. Neuwald; Christopher J. Lanczycki; Theresa K. Hodges; Aron Marchler-Bauer (Database J. Biol. Databases Curation, 2020)

iCn3D, a web-based 3D viewer for sharing 1D/2D/3D representations of biomolecular structures. - Jiyao Wang; Philippe Youkharibache; Dachuan Zhang; Christopher J. Lanczycki; Renata C. Geer; Thomas Madej; Lon Phan; Minghong Ward; Shennan Lu; Gabriele H. Marchler; Yanli Wang; Stephen H. Bryant; et al. (Bioinform., 2020)

CDD/SPARCLE: the conserved domain database in 2020. - Shennan Lu; Jiyao Wang; Farideh Chitsaz; Myra K. Derbyshire; Renata C. Geer; Noreen R. Gonzales; Marc Gwadz; David I. Hurwitz; Gabriele H. Marchler; James S. Song; Narmada Thanki; Roxanne A. Yamashita; et al. (Nucleic Acids Res., 2020)

The InterPro protein families and domains database: 20 years on. - Matthias Blum; Hsin-Yu Chang; Sara Chuguransky; Tiago Grego; Swaathi Kandasamy; Alex L. Mitchell; Gift Nuka; Typhaine Paysan-Lafosse; Matloob Qureshi; Shriya Raj; Lorna J. Richardson; Gustavo A. Salazar; et al. (Nucleic Acids Res., 2021)

RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation. - Wenjun Li; Kathleen O'Neill; Daniel H. Haft; Michael DiCuccio; Vyacheslav Chetvernin; Azat Badretdin; George Coulouris; Farideh Chitsaz; Myra K. Derbyshire; A. Scott Durkin; Noreen R. Gonzales; Marc Gwadz; et al. (Nucleic Acids Res., 2021)

Database resources of the National Center for Biotechnology Information. - Eric W. Sayers; Jeffrey Beck; Evan Bolton; Devon Bourexis; James R. Brister; Kathi Canese; Donald C. Comeau; Kathryn Funk; Sunghwan Kim 002; William Klimke; Aron Marchler-Bauer; Melissa J. Landrum; et al. (Nucleic Acids Res., 2021)

A roadmap for the functional annotation of protein families: a community perspective. - Valérie de Crécy-Lagard; Rocio Amorin de Hegedus; Cecilia N. Arighi; Jill Babor; Alex Bateman; Ian Blaby; Crysten Blaby-Haas; Alan J. Bridge; Stephen K. Burley; Stacey Cleveland; Lucy J. Colwell; Ana Conesa; et al. (Database J. Biol. Databases Curation, 2022)

Database resources of the national center for biotechnology information. - Eric W. Sayers; Evan E. Bolton; J. Rodney Brister; Kathi Canese; Jessica Chan; Donald C. Comeau; Ryan Connor; Kathryn Funk; Chris Kelly; Sunghwan Kim 002; Tom Madej; Aron Marchler-Bauer; et al. (Nucleic Acids Res., 2022)

InterPro in 2022. - Typhaine Paysan-Lafosse; Matthias Blum; Sara Chuguransky; Tiago Grego; Beatriz Lázaro Pinto; Gustavo A. Salazar; Maxwell L. Bileschi; Peer Bork; Alan J. Bridge; Lucy J. Colwell; Julian Gough; Daniel H. Haft; et al. (Nucleic Acids Res., 2023)

Database resources of the National Center for Biotechnology Information in 2023. - Eric W. Sayers; Evan E. Bolton; J. Rodney Brister; Kathi Canese; Jessica Chan; Donald C. Comeau; Catherine M. Farrell; Michael Feldgarden; Anna M. Fine; Kathryn Funk; Eneida Hatcher; Sivakumar Kannan; et al. (Nucleic Acids Res., 2023)

The conserved domain database in 2023. - Jiyao Wang; Farideh Chitsaz; Myra K. Derbyshire; Noreen R. Gonzales; Marc Gwadz; Shennan Lu; Gabriele H. Marchler; James S. Song; Narmada Thanki; Roxanne A. Yamashita; Mingzhang Yang; Dachuan Zhang; et al. (Nucleic Acids Res., 2023)