Scalable Softcore Vector Processor for Biosequence Applications. - Arpith C. Jacob; Brandon Harris; Jeremy Buhler; Roger D. Chamberlain; Young H. Cho (FCCM, 2006)

FPGA-accelerated seed generation in Mercury BLASTP. - Arpith C. Jacob; Joseph M. Lancaster; Jeremy Buhler; Roger D. Chamberlain (FCCM, 2007)

A Banded Smith-Waterman FPGA Accelerator for Mercury BLASTP. - Brandon Harris; Arpith C. Jacob; Joseph M. Lancaster; Jeremy Buhler; Roger D. Chamberlain (FPL, 2007)

Preliminary results in accelerating profile HMM search on FPGAs. - Arpith C. Jacob; Joseph M. Lancaster; Jeremy D. Buhler; Roger D. Chamberlain (IPDPS, 2007)

Whole Genome Comparison on a Network of Workstations. - Arpith C. Jacob; Sugata Sanyal; Marcin Paprzycki; Rajan Arora; Maria Ganzha (ISPDC, 2007)

Applying SIMD Approach to Whole Genome Comparison on Commodity Hardware. - Arpith C. Jacob; Marcin Paprzycki; Maria Ganzha; Sugata Sanyal (PPAM, 2007)

Language classification using n-grams accelerated by FPGA-based Bloom filters. - Arpith C. Jacob; Maya B. Gokhale (HPRCTA, 2007)

Biosequence Similarity Search on the Mercury System. - Praveen Krishnamurthy; Jeremy Buhler; Roger D. Chamberlain; Mark A. Franklin; Kwame Gyang; Arpith C. Jacob; Joseph M. Lancaster (J. VLSI Signal Process., 2007)

Accelerating Nussinov RNA secondary structure prediction with systolic arrays on FPGAs. - Arpith C. Jacob; Jeremy Buhler; Roger D. Chamberlain (ASAP, 2008)

Hardware Technologies for High-Performance Data-Intensive Computing. - Maya B. Gokhale; Jonathan D. Cohen 001; Andy Yoo; William Marcus Miller; Arpith C. Jacob; Craig D. Ulmer; Roger A. Pearce (Computer, 2008)

Mercury BLASTP: Accelerating Protein Sequence Alignment. - Arpith C. Jacob; Joseph M. Lancaster; Jeremy Buhler; Brandon Harris; Roger D. Chamberlain (ACM Trans. Reconfigurable Technol. Syst., 2008)

Optimal runtime reconfiguration strategies for systolic arrays. - Arpith C. Jacob; Jeremy D. Buhler; Roger D. Chamberlain (FPL, 2009)

Design of throughput-optimized arrays from recurrence abstractions. - Arpith C. Jacob; Jeremy D. Buhler; Roger D. Chamberlain (ASAP, 2010)

Rapid RNA Folding: Analysis and Acceleration of the Zuker Recurrence. - Arpith C. Jacob; Jeremy D. Buhler; Roger D. Chamberlain (FCCM, 2010)

Design space exploration of throughput-optimized arrays from recurrence abstractions (abstract only). - Arpith C. Jacob; Jeremy D. Buhler; Roger D. Chamberlain (FPGA, 2010)

Coordinating GPU threads for OpenMP 4.0 in LLVM. - Carlo Bertolli; Samuel Antão; Alexandre E. Eichenberger; Kevin O'Brien; Zehra Sura; Arpith C. Jacob; Tong Chen 001; Olivier Sallenave (LLVM@SC, 2014)

Data access optimization in a processing-in-memory system. - Zehra Sura; Arpith C. Jacob; Tong Chen 001; Bryan S. Rosenburg; Olivier Sallenave; Carlo Bertolli; Samuel Antao; José R. Brunheroto; Yoonho Park; Kevin O'Brien; Ravi Nair (Conf. Computing Frontiers, 2015)

Exploiting Fine- and Coarse-Grained Parallelism Using a Directive Based Approach. - Arpith C. Jacob; Ravi Nair; Alexandre E. Eichenberger; Samuel Antão; Carlo Bertolli; Tong Chen 001; Zehra Sura; Kevin O'Brien; Michael Wong (IWOMP, 2015)

Progressive Codesign of an Architecture and Compiler Using a Proxy Application. - Arpith C. Jacob; Ravi Nair; Tong Chen 001; Zehra Sura; Changhoan Kim; Carlo Bertolli; Samuel Antão; Kevin O'Brien (SBAC-PAD, 2015)

Performance analysis of OpenMP on a GPU using a CORAL proxy application. - Gheorghe-Teodor Bercea; Carlo Bertolli; Samuel F. Antão; Arpith C. Jacob; Alexandre E. Eichenberger; Tong Chen 001; Zehra Sura; Hyojin Sung; Georgios Rokos; David Appelhans; Kevin O'Brien (PMBS@SC, 2015)

Integrating GPU support for OpenMP offloading directives into Clang. - Carlo Bertolli; Samuel Antão; Gheorghe-Teodor Bercea; Arpith C. Jacob; Alexandre E. Eichenberger; Tong Chen 001; Zehra Sura; Hyojin Sung; Georgios Rokos; David Appelhans; Kevin O'Brien (LLVM@SC, 2015)

Active Memory Cube: A processing-in-memory architecture for exascale systems. - Ravi Nair; Samuel Antão; Carlo Bertolli; Pradip Bose; José R. Brunheroto; Tong Chen 001; Chen-Yong Cher; Carlos H. A. Costa; J. Doi; Constantinos Evangelinos; Bruce M. Fleischer; Thomas W. Fox; et al. (IBM J. Res. Dev., 2015)

The workshop on compiler-driven performance. - Xipeng Shen; Clark Verbrugge; Daniel Neilson; Arpith C. Jacob (CASCON, 2016)

Early Experiences Porting Three Applications to OpenMP 4.5. - Ian Karlin; Tom Scogland; Arpith C. Jacob; Samuel F. Antão; Gheorghe-Teodor Bercea; Carlo Bertolli; Bronis R. de Supinski; Erik W. Draeger; Alexandre E. Eichenberger; Jim Glosli; Holger Jones; Adam Kunen; et al. (IWOMP, 2016)

Offloading Support for OpenMP in Clang and LLVM. - Samuel F. Antão; Alexey Bataev; Arpith C. Jacob; Gheorghe-Teodor Bercea; Alexandre E. Eichenberger; Georgios Rokos; Matt Martineau; Tian Jin; Guray Ozen; Zehra Sura; Tong Chen 001; Hyojin Sung; et al. (LLVM-HPC@SC, 2016)

Performance Analysis and Optimization of Clang's OpenMP 4.5 GPU Support. - Matt Martineau; Simon McIntosh-Smith; Carlo Bertolli; Arpith C. Jacob; Samuel F. Antão; Alexandre E. Eichenberger; Gheorghe-Teodor Bercea; Tong Chen 001; Tian Jin; Kevin O'Brien; Georgios Rokos; Hyojin Sung; et al. (PMBS@SC, 2016)

From Describing to Prescribing Parallelism: Translating the SPEC ACCEL OpenACC Suite to OpenMP Target Directives. - Guido Juckeland; Oscar R. Hernandez; Arpith C. Jacob; Daniel Neilson; Verónica G. Vergara Larrea; Sandra Wienke; Alexander Bobyr; William C. Brantley; Sunita Chandrasekaran; Mathew E. Colgrove; Alexander Grund; Robert Henschel; et al. (ISC Workshops, 2016)

Efficient Fork-Join on GPUs Through Warp Specialization. - Arpith Chacko Jacob; Alexandre E. Eichenberger; Hyojin Sung; Samuel F. Antão; Gheorghe-Teodor Bercea; Carlo Bertolli; Alexey Bataev; Tian Jin; Tong Chen 001; Zehra Sura; Georgios Rokos; Kevin O'Brien (HiPC, 2017)

Implementing implicit OpenMP data sharing on GPUs. - Gheorghe-Teodor Bercea; Carlo Bertolli; Arpith C. Jacob; Alexandre E. Eichenberger; Alexey Bataev; Georgios Rokos; Hyojin Sung; Tong Chen 001; Kevin O'Brien (LLVM-HPC@SC, 2017)