Efficient Image Resizing Using Finite Differences. - Arrate Muñoz; Thierry Blu; Michael Unser (ICIP (3), 1999)

Non-uniform to uniform grid conversion using least-squares splines. - Arrate Muñoz; Thierry Blu; Michael Unser (EUSIPCO, 2000)

Spline kernels for continuous-space image processing. - Stefan Horbelt; Arrate Muñoz; Thierry Blu; Michael Unser (ICASSP, 2000)

Least-squares image resizing using finite differences. - Arrate Muñoz; Thierry Blu; Michael Unser (IEEE Trans. Image Process., 2001)

Continuous wavelet transform with arbitrary scales and O(N) complexity. - Arrate Muñoz; Raphaël Ertlé; Michael Unser (Signal Process., 2002)

p-multiresolution analysis: how to reduce ringing and sparsify the error. - Arrate Muñoz; Thierry Blu; Michael Unser (IEEE Trans. Image Process., 2002)

Locally adaptive smoothing method based on B-splines. - G. Vidal-Cassanya; Arrate Muñoz-Barrutia; Michael Unser (CompIMAGE, 2006)

Restoration of Biomedical Images using Locally Adaptive B-Spline Smoothing. - Xabier Artaechevarria; Arrate Muñoz-Barrutia; Carlos Ortiz-de-Solorzano (ICIP (2), 2007)

Restoration of Micro-Ct Images Using Locally Adaptive B-Spline Smoothing. - Xabier Artaechevarria; Arrate Muñoz-Barrutia; Carlos Ortiz-de-Solorzano (ISBI, 2007)

Fast adaptive elliptical filtering using box splines. - Kunal Narayan Chaudhury; Arrate Muñoz-Barrutia; Michael Unser (ICIP, 2008)

Automation of the detection of lung cancer cells in minimal samples of bronchioalveolar lavage. - Carlos Ortiz-de-Solorzano; Thomas Pengo; Miguel Galarraga; Arrate Muñoz-Barrutia (ISBI, 2008)

Efficient classifier generation and weighted voting for atlas-based segmentation: two small steps faster and closer to the combination oracle. - Xabier Artaechevarria; Arrate Muñoz-Barrutia; Carlos Ortiz-de-Solórzano (Image Processing, 2008)

Segmentation of Touching Cell Nuclei Using a Two-Stage Graph Cut Model. - Ondrej Danek; Pavel Matula; Carlos Ortiz-de-Solorzano; Arrate Muñoz-Barrutia; Martin Maska; Michal Kozubek 001 (SCIA, 2009)

A Two-Phase Segmentation of Cell Nuclei Using Fast Level Set-Like Algorithms. - Martin Maska; Ondrej Danek; Carlos Ortiz-de-Solorzano; Arrate Muñoz-Barrutia; Michal Kozubek 001; Ignacio Fernández García (SCIA, 2009)

Combination Strategies in Multi-Atlas Image Segmentation: Application to Brain MR Data. - Xabier Artaechevarria; Arrate Muñoz-Barrutia; Carlos Ortiz-de-Solorzano (IEEE Trans. Medical Imaging, 2009)

Automatic leakage detection and recovery for airway tree extraction in chest CT images. - Mario Ceresa; Xabier Artaechevarria; Arrate Muñoz-Barrutia; Carlos Ortiz-de-Solorzano (ISBI, 2010)

Fast detection of cells using a continuously scalable Mexican-hat-like template. - Kunal Narayan Chaudhury; Zsuzsanna Püspöki; Arrate Muñoz-Barrutia; Daniel Sage; Michael Unser (ISBI, 2010)

Fast Space-Variant Elliptical Filtering Using Box Splines. - Kunal Narayan Chaudhury; Arrate Muñoz-Barrutia; Michael Unser (IEEE Trans. Image Process., 2010)

Spatially Variant Convolution With Scaled B-Splines. - Arrate Muñoz-Barrutia; Xabier Artaechevarria; Carlos Ortiz-de-Solorzano (IEEE Trans. Image Process., 2010)

Characterization of emphysema in low dose computed tomography images using maximum likelihood estimation of the scale exponent. - Mario Ceresa; Arrate Muñoz-Barrutia; Carlos Ortiz-de-Solorzano (ISBI, 2012)

Fast tracking of fluorescent cells based on the Chan-Vese model. - Martin Maska; Arrate Muñoz-Barrutia; Carlos Ortiz-de-Solorzano (ISBI, 2012)

Individual nodule tracking in micro-CT images of a mouse model of lung cancer. - Rina Dewi Rudyanto; Ainhoa Agirre; Carlos Ortiz-de-Solorzano; Arrate Muñoz-Barrutia (ISBI, 2012)

Detecting airway remodeling in COPD and emphysema using low-dose CT imaging. - Rina Dewi Rudyanto; Mario Ceresa; Arrate Muñoz-Barrutia; Carlos Ortiz-de-Solórzano (Computer-Aided Diagnosis, 2012)

Wavelet-based detection of transcriptional activity on a novel Staphylococcus aureus tiling microarray. - Victor Segura; Alejandro Toledo-Arana; Maite Uzqueda; Iñigo Lasa; Arrate Muñoz-Barrutia (BMC Bioinform., 2012)

Quantification of Lung Damage in an Elastase-Induced Mouse Model of Emphysema. - Arrate Muñoz-Barrutia; Mario Ceresa; Xabier Artaechevarria; Luis M. Montuenga; Carlos Ortiz-de-Solorzano (Int. J. Biomed. Imaging, 2012)

Registration of multiple stained histological sections. - Jirí Borovec; Jan Kybic; Michael Busta; Carlos Ortiz-de-Solorzano; Arrate Muñoz-Barrutia (ISBI, 2013)

Automatic quantification of filopodia-based cell migration. - Martin Maska; Xabier Morales; Arrate Muñoz-Barrutia; Ana Rouzaut; Carlos Ortiz-de-Solorzano (ISBI, 2013)

Modeling airway probability. - Rina Dewi Rudyanto; Arrate Muñoz-Barrutia; Alejandro A. Díaz 001; James C. Ross; George R. Washko; Carlos Ortiz-de-Solorzano; Raúl San José Estépar (ISBI, 2013)

Individual nodule tracking in micro-CT images of a longitudinal lung cancer mouse model. - Rina Dewi Rudyanto; Gorka Bastarrika; Gabriel de Biurrun; Jackeline Agorreta; Luis M. Montuenga; Carlos Ortiz-de-Solorzano; Arrate Muñoz-Barrutia (Medical Image Anal., 2013)

Segmentation and Shape Tracking of Whole Fluorescent Cells Based on the Chan-Vese Model. - Martin Maska; Ondrej Danek; Saray Garasa; Ana Rouzaut; Arrate Muñoz-Barrutia; Carlos Ortiz-de-Solorzano (IEEE Trans. Medical Imaging, 2013)

A benchmark for comparison of cell tracking algorithms. - Martin Maska; Vladimír Ulman; David Svoboda; Pavel Matula; Petr Matula; Cristina Ederra; Ainhoa Urbiola; Tomás España; Subramanian Venkatesan 001; Deepak M. W. Balak; Pavel Karas; Tereza Bolcková; et al. (Bioinform., 2014)

A Novel Automated Microscopy Platform for Multiresolution Multispectral Early Detection of Lung Cancer Cells in Bronchoalveolar Lavage Samples. - Thomas Pengo; Arrate Muñoz-Barrutia; Carlos Ortiz-de-Solorzano (IEEE Syst. J., 2014)

Characterization of the role of collagen network structure and composition in cancer cell migration. - María Anguiano; Carlos Castilla; Martin Maska; Cristina Ederra; Javier Fernández-Marqués; Rafael Peláez; Ana Rouzaut; Arrate Muñoz-Barrutia; Michal Kozubek 001; Carlos Ortiz-de-Solorzano (EMBC, 2015)

Quantification of the 3D collagen network geometry in confocal reflection microscopy. - Martin Maska; Cristina Ederra; Javier Fernández-Marqués; Arrate Muñoz-Barrutia; Michal Kozubek 001; Carlos Ortiz-de-Solorzano (ICIP, 2015)

Atlas-based segmentation of brainstem regions in neuromelanin-sensitive magnetic resonance images. - Marc Puigvert; Gabriel Castellanos; Javier Uranga; Ricardo C. Abad; María A. Fernández-Seara; Pau Pastor; María A. Pastor; Arrate Muñoz-Barrutia; Carlos Ortiz-de-Solorzano (Computer-Aided Diagnosis, 2015)

Quantification of pulmonary vessel diameter in low-dose CT images. - Rina Dewi Rudyanto; Carlos Ortiz-de-Solórzano; Arrate Muñoz-Barrutia (Computer-Aided Diagnosis, 2015)

Quantitative Bioimaging: Signal Processing in Light Microscopy [From the Guest Editors]. - Arrate Muñoz-Barrutia; Jelena Kovacevic; Michal Kozubek 001; Erik Meijering; Braham Parvin (IEEE Signal Process. Mag., 2015)

Toward a Morphodynamic Model of the Cell: Signal processing for cell modeling. - Carlos Ortiz-de-Solorzano; Arrate Muñoz-Barrutia; Erik Meijering; Michal Kozubek 001 (IEEE Signal Process. Mag., 2015)

L1-regularized reconstruction for traction force microscopy. - Alejandro Sune-Aunon; Álvaro Jorge-Peñas; Hans Van Oosterwyck; Arrate Muñoz-Barrutia (ISBI, 2016)

Automated analysis of collagen networks via microscopy. - Alejandro Sune-Aunon; Mario Gonzalez-Arjona; Alejandro Vidal; Javier Lanillos; Arrate Muñoz-Barrutia (EUSIPCO, 2017)

Super-resolved Traction Force Microscopy over whole cells. - Alejandro Sune-Aunon; Álvaro Jorge-Peñas; Hans Van Oosterwyck; Arrate Muñoz-Barrutia (ISBI, 2017)

Full L1-regularized Traction Force Microscopy over whole cells. - Alejandro Sune-Aunon; Álvaro Jorge-Peñas; Rocío Aguilar-Cuenca; Miguel Vicente-Manzanares; Hans Van Oosterwyck; Arrate Muñoz-Barrutia (BMC Bioinform., 2017)

Benchmarking of Image Registration Methods for Differently Stained Histological Slides. - Jirí Borovec; Arrate Muñoz-Barrutia; Jan Kybic (ICIP, 2018)

Towards an informational model for tuberculosis lesion discrimination on X-ray CT images. - P. M. Gordaliza; Juan José Vaquero; Sally Sharpe; Manuel Desco; Arrate Muñoz-Barrutia (ISBI, 2018)

Tuberculosis Histopathology on X Ray CT. - Ana Ortega-Gil; Arrate Muñoz-Barrutia; Laura Fernandez-Terron; Juan José Vaquero (RAMBO+BIA+TIA@MICCAI, 2018)

Spotlight on Bioimaging and Signal Processing [In the Spotlight]. - Erik Meijering; Arrate Muñoz-Barrutia (IEEE Signal Process. Mag., 2018)

Tuberculosis Lesions in CT Images Inferred using 3D-CNN and Multi-Task Learning. - P. M. Gordaliza; Juan José Vaquero; Sally Sharpe; Fergus Gleeson; Arrate Muñoz-Barrutia (ISBI, 2019)

Dynamic Atlas-Based Segmentation and Quantification of Neuromelanin-Rich Brainstem Structures in Parkinson Disease. - Mikel Ariz; Ricardo C. Abad; Gabriel Castellanos; Martin Martinez; Arrate Muñoz-Barrutia; María A. Fernández-Seara; Pau Pastor; María A. Pastor; Carlos Ortiz-de-Solorzano (IEEE Trans. Medical Imaging, 2019)

Nonlinear Image Registration and Pixel Classification Pipeline for the Study of Tumor Heterogeneity Maps. - Laura Nicolás-Sáenz; Sara Guerrero-Aspizua; Javier Pascau; Arrate Muñoz-Barrutia (Entropy, 2020)

MosaicExplorerJ: Interactive stitching of terabyte-size tiled datasets from lightsheet microscopy. - Sébastien Tosi; Lídia Bardia; Maria Jose Barallobre; Arrate Muñoz-Barrutia; María Luisa Soto-Montenegro; Julien Colombelli (F1000Research, 2020)

Editorial: Introduction to the Issue on Domain Enriched Learning for Medical Imaging. - Vishal Monga; Scott T. Acton; Abd-Krim Seghouane; Arrate Muñoz-Barrutia; Jong Chul Ye (IEEE J. Sel. Top. Signal Process., 2020)

Development of an Inverted Epifluorescence Microscope for Long-Term Monitoring of Bacteria in Multiplexed Microfluidic Devices. - Amaro Torres-Simón; María Henar Marino; Clara Gómez-Cruz; Marina Cañadas; Miguel Marco; Jorge Ripoll; Juan José Vaquero; Arrate Muñoz-Barrutia (Sensors, 2020)

ANHIR: Automatic Non-Rigid Histological Image Registration Challenge. - Jirí Borovec; Jan Kybic; Ignacio Arganda-Carreras; Dmitry V. Sorokin; Gloria Bueno; Alexander V. Khvostikov; Spyridon Bakas; Eric I-Chao Chang; Stefan Heldmann; Kimmo Kartasalo; Leena Latonen; Johannes Lotz 002; et al. (IEEE Trans. Medical Imaging, 2020)

Guest Editorial: Special Issue on Imaging-Based Diagnosis of COVID-19. - Dinggang Shen; Yaozong Gao; Arrate Muñoz-Barrutia; Delia Cabrera DeBuc; Gennaro Percannella (IEEE Trans. Medical Imaging, 2020)

Delta-Radiomics Signature For Prediction Of Survival In Advanced Nsclc Patients Treated With Immunotherapy. - Benito Farina; na Delia Ramos Guerra; Carmelo Palacios Miras; Guillermo Gallardo Madueño; Arrate Muñoz-Barrutia; German R. Peces-Barba; Luis Miguel Seijo Maceiras; Jesús Corral; Ignacio Gil-Bazo; Manuel Dómine Gómez; María J. Ledesma-Carbayo (ISBI, 2021)

Molecular Imaging of Pulmonary Tuberculosis in an Ex-Vivo Mouse Model Using Spectral Photon-Counting Computed Tomography and Micro-CT. - Chiara Lowe; Ana Ortega-Gil; Mahdieh Moghiseh; Nigel G. Anderson; Arrate Muñoz-Barrutia; Juan José Vaquero; Aamir Younas Raja; Aysouda Matanaghi; Alexander I. Chernoglazov; Theodorus Dapamede; Sikiru A. Adebileje; Steven Alexander; et al. (IEEE Access, 2021)

Search for temporal cell segmentation robustness in phase-contrast microscopy videos. - Estibaliz Gómez-de-Mariscal; Hasini Jayatilaka; Özgün Çiçek; Thomas Brox; Denis Wirtz; Arrate Muñoz-Barrutia (CoRR, 2021)

Deep learning based domain adaptation for mitochondria segmentation on EM volumes. - Daniel Franco-Barranco; Julio Pastor-Tronch; Aitor González-Marfil; Arrate Muñoz-Barrutia; Ignacio Arganda-Carreras (Comput. Methods Programs Biomed., 2022)

Translational Lung Imaging Analysis Through Disentangled Representations. - Pedro M. Gordaliza; Juan José Vaquero; Arrate Muñoz-Barrutia (CoRR, 2022)

ABANICCO: A New Color Space for Multi-Label Pixel Classification and Color Segmentation. - Laura Nicolás-Sáenz; Agapito Ledezma; Javier Pascau; Arrate Muñoz-Barrutia (CoRR, 2022)

Stable Deep Neural Network Architectures for Mitochondria Segmentation on Electron Microscopy Volumes. - Daniel Franco-Barranco; Arrate Muñoz-Barrutia; Ignacio Arganda-Carreras (Neuroinformatics, 2022)

BiaPy: a ready-to-use library for Bioimage Analysis Pipelines. - Daniel Franco-Barranco; Jesús A. Andrés-San Román; Pedro Gómez-Gálvez; Luis M. Escudero; Arrate Muñoz-Barrutia; Ignacio Arganda-Carreras (ISBI, 2023)

BioImage.IO Chatbot: A Personalized Assistant for BioImage Analysis Augmented by Community Knowledge Base. - Wanlu Lei; Caterina Fuster-Barceló; Arrate Muñoz-Barrutia; Wei Ouyang (CoRR, 2023)

ABANICCO: A New Color Space for Multi-Label Pixel Classification and Color Analysis. - Laura Nicolás-Sáenz; Agapito Ledezma; Javier Pascau; Arrate Muñoz-Barrutia (Sensors, 2023)

From Nano to Macro: An overview of the IEEE Bio Image and Signal Processing Technical Committee. - Selin Aviyente; Alejandro F. Frangi; Erik Meijering; Arrate Muñoz-Barrutia; Michael Liebling; Dimitri Van De Ville; Jean-Christophe Olivo-Marin; Jelena Kovacevic; Michael Unser (IEEE Signal Process. Mag., 2023)

Calibration Methods for Alzheimer Disease Detection. - Lorena Gallego-Viñarás; Anna Michela-Gaeta; Gerard Pinol-Ripoll; Ferrán Barbé; Pablo M. Olmos; Arrate Muñoz-Barrutia (MLSP, 2024)

Alzheimer's disease detection in PSG signals. - Lorena Gallego-Viñarás; Juan Miguel Mira-Tomas; Anna Michela-Gaeta; Gerard Pinol-Ripoll; Ferrán Barbé; Pablo M. Olmos; Arrate Muñoz-Barrutia (CoRR, 2024)

Super-Resolution Benchmarking for 3D Image-to-Image Fusion Problem. - Daniel Franco-Barranco; Aitor González-Marfil; Albert Cardona; Arrate Muñoz-Barrutia; Ignacio Arganda-Carreras (ISBI, 2025)

Alzheimer's Disease Detection in EEG Sleep Signals. - Lorena Gallego-Viñarás; Juan Miguel Mira-Tomas; Anna Michela-Gaeta; Gerard Pinol-Ripoll; Ferrán Barbé; Pablo M. Olmos; Arrate Muñoz-Barrutia (IEEE J. Biomed. Health Informatics, 2025)

SAMJ: Fast Image Annotation on ImageJ/Fiji via Segment Anything Model. - Carlos Garcia-Lopez-de-Haro; Caterina Fuster-Barceló; Curtis T. Rueden; Jónathan Heras; Vladimír Ulman; Daniel Franco-Barranco; Adrián Inés; Kevin W. Eliceiri; Jean-Christophe Olivo-Marin; Jean-Yves Tinevez; Daniel Sage; Arrate Muñoz-Barrutia (CoRR, 2025)