A parallel neural network simulator on the connection machine CM-5. - Martin Reczko; Artemis G. Hatzigeorgiou; Niels Mache; Andreas Zell; Sándor Suhai (Comput. Appl. Biosci., 1995)

Detection of Eukaryotic POL II Promoters with Multi-State Time-Delay Neural Networks. - Niels Mache; Paul Levi; Artemis G. Hatzigeorgiou; Martin Reczko (German Conference on Bioinformatics, 1996)

Computational analysis of transcriptional regulatory elements: a field in flux. - Philipp Bucher; James W. Fickett; Artemis G. Hatzigeorgiou (Comput. Appl. Biosci., 1996)

Feature recognition on expressed sequence tags of human DNA. - Artemis G. Hatzigeorgiou; Martin Reczko (IJCNN, 1999)

Translation Initiation Site Prediction in Eucariotic MRNAs with High Accuracy. - Artemis G. Hatzigeorgiou (German Conference on Bioinformatics, 2000)

Prediction of human transnational initiation sites using a multiple neural network approach. - Christian Derst; Martin Reczko; Artemis G. Hatzigeorgiou (Int. J. Comput. Syst. Signals, 2000)

DIANA-EST: a statistical analysis. - Artemis G. Hatzigeorgiou; Petko Fiziev; Martin Reczko (Bioinform., 2001)

Finding Signal Peptides in Human Protein Sequences Using Recurrent Neural Networks. - Martin Reczko; Petko Fiziev; Eike Staub; Artemis G. Hatzigeorgiou (WABI, 2002)

Translation initiation start prediction in human cDNAs with high accuracy. - Artemis G. Hatzigeorgiou (Bioinform., 2002)

Artificial Neural Networks Based Systems for Recognition of Genomic Signals and Regions: A Review. - Vladimir B. Bajic; Suisheng Tang; Hao Han; Vladimir Brusic; Artemis G. Hatzigeorgiou (Informatica (Slovenia), 2002)

Computational Identification of Regulatory Factors Involved in MicroRNA Transcription. - Praveen Sethupathy; Molly Megraw; M. Inmaculada Barrasa; Artemis G. Hatzigeorgiou (Panhellenic Conference on Informatics, 2005)

Simple Methods of Finding Short Protein Coding Sequences. - Hanno Hinsch; Artemis G. Hatzigeorgiou (BIOCOMP, 2006)

Support Vector Machines for Predicting microRNA Hairpins. - Karol Szafranski; Molly Megraw; Martin Reczko; Artemis G. Hatzigeorgiou (BIOCOMP, 2006)

miRGen: a database for the study of animal microRNA genomic organization and function. - Molly Megraw; Praveen Sethupathy; Benoit Corda; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2007)

Global Discriminative Learning for Higher-Accuracy Computational Gene Prediction. - Axel Bernal; Koby Crammer; Artemis G. Hatzigeorgiou; Fernando Pereira 003 (PLoS Comput. Biol., 2007)

Lost in translation: an assessment and perspective for computational microRNA target identification. - Panagiotis Alexiou; Manolis Maragkakis; Giorgos L. Papadopoulos; Martin Reczko; Artemis G. Hatzigeorgiou (Bioinform., 2009)

DIANA-mirPath: Integrating human and mouse microRNAs in pathways. - Giorgos L. Papadopoulos; Panagiotis Alexiou; Manolis Maragkakis; Martin Reczko; Artemis G. Hatzigeorgiou (Bioinform., 2009)

Accurate microRNA target prediction correlates with protein repression levels. - Manolis Maragkakis; Panagiotis Alexiou; Giorgos L. Papadopoulos; Martin Reczko; Theodore Dalamagas 001; Giorgos Giannopoulos; George I. Goumas; Evangelos Koukis; Kornilios Kourtis; Victor A. Simossis; Praveen Sethupathy; Thanasis Vergoulis; et al. (BMC Bioinform., 2009)

DIANA-microT web server: elucidating microRNA functions through target prediction. - Manolis Maragkakis; Martin Reczko; Victor A. Simossis; Panagiotis Alexiou; Giorgos L. Papadopoulos; Theodore Dalamagas 001; Giorgos Giannopoulos; Georgios I. Goumas; Evangelos Koukis; Kornilios Kourtis; Thanasis Vergoulis; Nectarios Koziris; et al. (Nucleic Acids Res., 2009)

The database of experimentally supported targets: a functional update of TarBase. - Giorgos L. Papadopoulos; Martin Reczko; Victor A. Simossis; Praveen Sethupathy; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2009)

Predicting miRNA targets utilizing an Extended Profile HMM. - Jan Grau; Daniel Arend; Ivo Grosse; Artemis G. Hatzigeorgiou; Jens Keilwagen; Manolis Maragkakis; Claus Weinholdt; Stefan Posch (GCB, 2010)

FreePub: Collecting and Organizing Scientific Material Using Mindmaps. - Theodore Dalamagas 001; Tryfon Farmakakis; Manolis Maragkakis; Artemis G. Hatzigeorgiou (SWAT4LS, 2010)

miRGen 2.0: a database of microRNA genomic information and regulation. - Panagiotis Alexiou; Thanasis Vergoulis; Martin Gleditzsch; George Prekas; Theodore Dalamagas 001; Molly Megraw; Ivo Grosse; Timos K. Sellis; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2010)

DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association. - Manolis Maragkakis; Thanasis Vergoulis; Panagiotis Alexiou; Martin Reczko; Kyriaki Plomaritou; Mixail Gousis; Kornilios Kourtis; Nectarios Koziris; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2011)

TARCLOUD: A Cloud-Based Platform to Support miRNA Target Prediction. - Thanasis Vergoulis; Michail Alexakis; Theodore Dalamagas 001; Manolis Maragkakis; Artemis G. Hatzigeorgiou; Timos K. Sellis (SSDBM, 2012)

Publishing life science data as linked open data: the case study of miRBase. - Theodore Dalamagas 001; Nikos Bikakis; George Papastefanatos; Yannis Stavrakas; Artemis G. Hatzigeorgiou (WOD, 2012)

Functional microRNA targets in protein coding sequences. - Martin Reczko; Manolis Maragkakis; Panagiotis Alexiou; Ivo Grosse; Artemis G. Hatzigeorgiou (Bioinform., 2012)

TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support. - Thanasis Vergoulis; Ioannis S. Vlachos; Panagiotis Alexiou; George Georgakilas; Manolis Maragkakis; Martin Reczko; Stefanos Gerangelos; Nectarios Koziris; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2012)

DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways. - Ioannis S. Vlachos; Nikos Kostoulas; Thanasis Vergoulis; Georgios K. Georgakilas; Martin Reczko; Manolis Maragkakis; Maria D. Paraskevopoulou; Kostantinos Prionidis; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2012)

DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs. - Maria D. Paraskevopoulou; Georgios K. Georgakilas; Nikos Kostoulas; Martin Reczko; Manolis Maragkakis; Theodore M. Dalamagas; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2013)

DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows. - Maria D. Paraskevopoulou; Georgios K. Georgakilas; Nikos Kostoulas; Ioannis S. Vlachos; Thanasis Vergoulis; Martin Reczko; Christos Filippidis; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2013)

MR-microT: a MapReduce-based MicroRNA target prediction method. - Ilias Kanellos; Thanasis Vergoulis; Dimitris Sacharidis; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou; Stelios Sartzetakis; Timos K. Sellis (SSDBM, 2014)

Publishing Diachronic Life Science Linked Data. - Katerina Gkirtzou; Thanasis Vergoulis; Artemis G. Hatzigeorgiou; Timos K. Sellis; Theodore Dalamagas 001 (SWAT4LS, 2014)

MirPub v2: Towards Ranking and Refining miRNA Publication Search Results. - Ilias Kanellos; Vasiliki Vlachokyriakou; Thanasis Vergoulis; Georgios K. Georgakilas; Yannis Vassiliou; Artemis G. Hatzigeorgiou; Theodore Dalamagas 001 (TPDL, 2015)

TarMiner: automatic extraction of miRNA targets from literature. - Rodothea-Myrsini Tsoupidi; Ilias Kanellos; Thanasis Vergoulis; Ioannis S. Vlachos; Artemis G. Hatzigeorgiou; Theodore Dalamagas 001 (SSDBM, 2015)

mirPub: a database for searching microRNA publications. - Thanasis Vergoulis; Ilias Kanellos; Nikos Kostoulas; Georgios K. Georgakilas; Timos K. Sellis; Artemis G. Hatzigeorgiou; Theodore Dalamagas 001 (Bioinform., 2015)

DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA: mRNA interactions. - Ioannis S. Vlachos; Maria D. Paraskevopoulou; Dimitra Karagkouni; Georgios K. Georgakilas; Thanasis Vergoulis; Ilias Kanellos; Ioannis-Laertis Anastasopoulos; Sofia Maniou; Konstantina Karathanou; Despina Kalfakakou; Athanasios Fevgas; Theodore Dalamagas 001; et al. (Nucleic Acids Res., 2015)

DIANA-miRPath v3.0: deciphering microRNA function with experimental support. - Ioannis S. Vlachos; Konstantinos Zagganas; Maria D. Paraskevopoulou; Georgios K. Georgakilas; Dimitra Karagkouni; Thanasis Vergoulis; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2015)

DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators. - Georgios K. Georgakilas; Ioannis S. Vlachos; Konstantinos Zagganas; Thanasis Vergoulis; Maria D. Paraskevopoulou; Ilias Kanellos; Panayiotis Tsanakas; Dimitris Dellis; Athanasios Fevgas; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2016)

DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts. - Maria D. Paraskevopoulou; Ioannis S. Vlachos; Dimitra Karagkouni; Georgios K. Georgakilas; Ilias Kanellos; Thanasis Vergoulis; Konstantinos Zagganas; Panayiotis Tsanakas; Evangelos Floros; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2016)

DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data. - Ioannis S. Vlachos; Thanasis Vergoulis; Maria D. Paraskevopoulou; Filopoimin Lykokanellos; Georgios K. Georgakilas; Penny Georgiou; Serafeim Chatzopoulos; Dimitra Karagkouni; Foteini Christodoulou; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2016)

ECCB 2018: The 17th European Conference on Computational Biology. - Artemis G. Hatzigeorgiou; Pantelis G. Bagos; Panayiotis V. Benos; Christoforos Nikolaou; Yves Moreau; Ioannis Kavakiotis (Bioinform., 2018)

DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions. - Dimitra Karagkouni; Maria D. Paraskevopoulou; Serafeim Chatzopoulos; Ioannis S. Vlachos; Spyros Tastsoglou; Ilias Kanellos; Dimitris Papadimitriou; Ioannis Kavakiotis; Sofia Maniou; Giorgos Skoufos; Thanasis Vergoulis; Theodore Dalamagas 001; et al. (Nucleic Acids Res., 2018)

DiS-TSS: An Annotation Agnostic Algorithm for TSS Identification. - Dimitris Grigoriadis; Nikos Perdikopanis; Georgios K. Georgakilas; Artemis G. Hatzigeorgiou (IWBBIO, 2020)

DIANA-LncBase v3: indexing experimentally supported miRNA targets on non-coding transcripts. - Dimitra Karagkouni; Maria D. Paraskevopoulou; Spyros Tastsoglou; Giorgos Skoufos; Anna Karavangeli; Vasileios Pierros; Elissavet Zacharopoulou; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2020)

DIANA-miRGen v4: indexing promoters and regulators for more than 1500 microRNAs. - Nikos Perdikopanis; Georgios K. Georgakilas; Dimitris Grigoriadis; Vasileios Pierros; Ioannis Kavakiotis; Panagiotis Alexiou; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2021)

Peryton: a manual collection of experimentally supported microbe-disease associations. - Giorgos Skoufos; Filippos S. Kardaras; Athanasios Alexiou; Ioannis Kavakiotis; Anastasia Lambropoulou; Vasiliki Kotsira; Spyros Tastsoglou; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2021)

RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. - Blake A. Sweeney; Anton I. Petrov; Carlos Eduardo Ribas; Robert D. Finn; Alex Bateman; Maciej Szymanski; Wojciech M. Karlowski; Stefan E. Seemann; Jan Gorodkin; Jamie J. Cannone; Robin Ray Gutell; Simon Kay; et al. (Nucleic Acids Res., 2021)

DeepTSS: multi-branch convolutional neural network for transcription start site identification from CAGE data. - Dimitris Grigoriadis; Nikos Perdikopanis; Georgios K. Georgakilas; Artemis G. Hatzigeorgiou (BMC Bioinform., 2022)

DIANA-miTED: a microRNA tissue expression database. - Ioannis Kavakiotis; Athanasios Alexiou; Spyros Tastsoglou; Ioannis S. Vlachos; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2022)

DIANA-microT 2023: including predicted targets of virally encoded miRNAs. - Spyros Tastsoglou; Athanasios Alexiou; Dimitra Karagkouni; Giorgos Skoufos; Elissavet Zacharopoulou; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2023)

DIANA-miRPath v4.0: expanding target-based miRNA functional analysis in cell-type and tissue contexts. - Spyros Tastsoglou; Giorgos Skoufos; Marios Miliotis; Dimitra Karagkouni; Ioannis Koutsoukos; Anna Karavangeli; Filippos S. Kardaras; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2023)

A Machine Learning algorithm for Predicting Translation Initiation Start Positions. - Stefanos Digenis; Dimitris Grigoriadis; Marios Miliotis; Artemis G. Hatzigeorgiou (CIBCB, 2024)

Leveraging Large Language Models for Information Extraction: Identifying microRNA - Gene Interactions in Biomedical Literature. - Steve Stavropoulos; Elissavet Zacharopoulou; Spiros V. Georgakopoulos; Sotiris K. Tasoulis; Vassilis P. Plagianakos; Artemis G. Hatzigeorgiou (CIBCB, 2024)

microT-CNN: an avant-garde deep convolutional neural network unravels functional miRNA targets beyond canonical sites. - Elissavet Zacharopoulou; Maria D. Paraskevopoulou; Spyros Tastsoglou; Athanasios Alexiou; Anna Karavangeli; Vasileios Pierros; Stefanos Digenis; Galatea Mavromati; Artemis G. Hatzigeorgiou; Dimitra Karagkouni (Briefings Bioinform., 2024)