pyPAGE: A framework for Addressing biases in gene-set enrichment analysis - A case study on Alzheimer's disease. - Artemy Bakulin; Noam B. Teyssier; Martin Kampmann; Matvei Khoroshkin; Hani Goodarzi (PLoS Comput. Biol., 2024)

The CausalBench challenge: A machine learning contest for gene network inference from single-cell perturbation data. - Mathieu Chevalley; Jacob Sackett-Sanders; Yusuf H. Roohani; Pascal Notin; Artemy Bakulin; Dariusz Brzezinski; Kaiwen Deng; Yuanfang Guan; Justin Hong; Michael Ibrahim 003; Wojciech Kotlowski; Marcin Kowiel; et al. (CLeaR, 2025)