EGene: a configurable pipeline generation system for automated sequence analysis. - Alan M. Durham; André Yoshiaki Kashiwabara; Fernando T. G. Matsunaga; Paulo H. Ahagon; Flávia Rainone; Leonardo Varuzza; Arthur Gruber (Bioinform., 2005)

TRAP: automated classification, quantification and annotation of tandemly repeated sequences. - Tiago José P. Sobreira; Alan M. Durham; Arthur Gruber (Bioinform., 2006)

Biological shape characterization for automatic image recognition and diagnosis of protozoan parasites of the genus Eimeria. - César A. B. Castañón; Jane S. Fraga; Sandra Fernandez; Arthur Gruber; Luciano da F. Costa (Pattern Recognit., 2007)

Sequence-specific reconstruction from fragmentary databases using seed sequences: implementation and validation on SAGE, proteome and generic sequencing data. - Tiago José P. Sobreira; Arthur Gruber (Bioinform., 2008)

The Eimeria Transcript DB: an integrated resource for annotated transcripts of protozoan parasites of the genus Eimeria. - Luiz Thibério Rangel; Jeniffer Novaes; Alan M. Durham; Alda Maria B. N. Madeira; Arthur Gruber (Database J. Biol. Databases Curation, 2013)