GRAMPS - A graphics language interpreter for real-time, interactive, three-dimensional picture editing and animation. - T. J. O'Donnell; Arthur J. Olson (SIGGRAPH, 1981)

Cooperative programming in crich ystallography. - Richard A. Alden; Gerard Bricogne; Stephan T. Freer; Sid R. Hall; Wayne A. Hendrickson; Penelope Anne Machin; Robert J. Munn; Arthur J. Olson; George N. Reeke Jr. (Comput. Chem., 1983)

GRANNY, a companion to GRAMPS for the real-time manipulation of macromolecular models. - Michael L. Connolly; Arthur J. Olson (Comput. Chem., 1985)

Molecular applications of volume rendering and 3-D texture maps. - David S. Goodsell; Arthur J. Olson (VVS, 1989)

Fast and Robust Computation of Molecular Surfaces. - Michel F. Sanner; Arthur J. Olson; Jean-Claude Spehner (SCG, 1995)

Constructing Lattice Models of Protein Chains with Side Groups. - Boris A. Reva; Dmitrii S. Rykunov; Arthur J. Olson; Alexei V. Finkelstein (J. Comput. Biol., 1995)

Applications of Evolutionary Programming for the Prediction of Protein-Protein Interactions. - Bruce S. Duncan; Arthur J. Olson (Evolutionary Programming, 1996)

Distributed automated docking of flexible ligands to proteins: Parallel applications of AutoDock 2.4. - Garrett M. Morris; David S. Goodsell; Ruth Huey; Arthur J. Olson (J. Comput. Aided Mol. Des., 1996)

Lattice modeling: Accuracy of energy calculations. - Boris A. Reva; Michel F. Sanner; Arthur J. Olson; Alexei V. Finkelstein (J. Comput. Chem., 1996)

Computational Coevolution of Antiviral Drug Resistance. - Christopher D. Rosin; Richard K. Belew; Garrett M. Morris; Arthur J. Olson; David S. Goodsell (Artif. Life, 1998)

Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function. - Garrett M. Morris; David S. Goodsell; Robert S. Halliday; Ruth Huey; William E. Hart; Richard K. Belew; Arthur J. Olson (J. Comput. Chem., 1998)

Integrating Computation and Visualization for Biomolecular Analysis: An Example Using Python and AVS. - Michel F. Sanner; Bruce S. Duncan; C. J. Carrillo; Arthur J. Olson (Pacific Symposium on Biocomputing, 1999)

Segmentation and 3D visualization of high-resolution human brain cryosections. - Ikuko Takanashi; Eric B. Lum; Kwan-Liu Ma; Jörg Meyer 003; Bernd Hamann; Arthur J. Olson (Visualization and Data Analysis, 2002)

Role of Haptics in Teaching Structural Molecular Biolog. - Ganesh Sankaranarayanan; Suzanne Weghorst; Michel F. Sanner; Alexandre Gillet; Arthur J. Olson (HAPTICS, 2003)

Integrating Biomolecular Analysis and Visual Programming: Flexibility and Interactivity in the Design of Bioinformatics Tools. - Daniel Stoffler; Sophie I. Coon; Ruth Huey; Arthur J. Olson; Michel F. Sanner (HICSS, 2003)

Automated docking of ligands to an artificial active site: augmenting crystallographic analysis with computer modeling. - Robin J. Rosenfeld; David S. Goodsell; Rabi A. Musah; Garrett M. Morris; David B. Goodin; Arthur J. Olson (J. Comput. Aided Mol. Des., 2003)

Computer-linked autofabricated 3D models for teaching structural biology. - Alexandre Gillet; Suzanne Weghorst; William Winn; Daniel Stoffler; Michel F. Sanner; David S. Goodsell; Arthur J. Olson (SIGGRAPH Sketches, 2004)

Augmented Reality with Tangible Auto-Fabricated Models for Molecular Biology Applications. - Alexandre Gillet; Michel F. Sanner; Daniel Stoffler; David S. Goodsell; Arthur J. Olson (IEEE Visualization, 2004)

Tangible Augmented Interfaces for Structural Molecular Biology. - Alexandre Gillet; Michel F. Sanner; Daniel Stoffler; Arthur J. Olson (IEEE Computer Graphics and Applications, 2005)

A semiempirical free energy force field with charge-based desolvation. - Ruth Huey; Garrett M. Morris; Arthur J. Olson; David S. Goodsell (J. Comput. Chem., 2007)

Analysis of HIV Wild-Type and Mutant Structures via in Silico Docking against Diverse Ligand Libraries. - Max W. Chang; William Lindstrom; Arthur J. Olson; Richard K. Belew (J. Chem. Inf. Model., 2007)

Empirical entropic contributions in computational docking: Evaluation in APS reductase complexes. - Max W. Chang; Richard K. Belew; Kate S. Carroll; Arthur J. Olson; David S. Goodsell (J. Comput. Chem., 2008)

AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility. - Garrett M. Morris; Ruth Huey; William Lindstrom; Michel F. Sanner; Richard K. Belew; David S. Goodsell; Arthur J. Olson (J. Comput. Chem., 2009)

AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading. - Oleg Trott; Arthur J. Olson (J. Comput. Chem., 2010)

Robust Scoring Functions for Protein-Ligand Interactions with Quantum Chemical Charge Models. - Jui-Chih Wang; Jung-Hsin Lin; Chung-Ming Chen; Alex L. Perryman; Arthur J. Olson (J. Chem. Inf. Model., 2011)

Cyclin-dependent kinases 5 template: Useful for virtual screening. - Siripit Pitchuanchom; Chantana Boonyarat; Stefano Forli; Arthur J. Olson; Chavi Yenjai (Comput. Biol. Medicine, 2012)

uPy: A Ubiquitous CG Python API with Biological-Modeling Applications. - Ludovic Autin; Graham Johnson; Johan Hake; Arthur J. Olson; Michel F. Sanner (IEEE Computer Graphics and Applications, 2012)

Protein Flexibility in Virtual Screening: The BACE-1 Case Study. - Sandro Cosconati; Luciana Marinelli; Francesco Saverio Di Leva; Valeria La Pietra; Angela De Simone; Francesca Mancini; Vincenza Andrisano; Ettore Novellino; David S. Goodsell; Arthur J. Olson (J. Chem. Inf. Model., 2012)

Automated Docking with Protein Flexibility in the Design of Femtomolar "Click Chemistry" Inhibitors of Acetylcholinesterase. - Garrett M. Morris; Luke G. Green; Zoran Radic; Palmer Taylor; K. Barry Sharpless; Arthur J. Olson; Flavio Grynszpan (J. Chem. Inf. Model., 2013)

Identifying Affordances of 3D Printed Tangible Models for Understanding Core Biological Concepts. - Jodi L. Davenport; Matt Silberglitt; Jon Boxerman; Arthur J. Olson (ICLS, 2014)

Visual Analytics for Biological Data. - Raghu Machiraju; Carsten Görg; Arthur J. Olson (IEEE Computer Graphics and Applications, 2014)

Virtual screening of integrase inhibitors by large scale binding free energy calculations: the SAMPL4 challenge. - Emilio Gallicchio; Nan-Jie Deng; Peng He; Lauren Wickstrom; Alexander L. Perryman; Daniel N. Santiago; Stefano Forli; Arthur J. Olson; Ronald M. Levy (J. Comput. Aided Mol. Des., 2014)

Blind prediction of HIV integrase binding from the SAMPL4 challenge. - David L. Mobley; Shuai Liu; Nathan M. Lim; Karisa L. Wymer; Alexander L. Perryman; Stefano Forli; Nan-Jie Deng; Justin Su; Kim Branson; Arthur J. Olson (J. Comput. Aided Mol. Des., 2014)

Virtual screening with AutoDock Vina and the common pharmacophore engine of a low diversity library of fragments and hits against the three allosteric sites of HIV integrase: participation in the SAMPL4 protein-ligand binding challenge. - Alexander L. Perryman; Daniel N. Santiago; Stefano Forli; Diogo Santos-Martins; Arthur J. Olson (J. Comput. Aided Mol. Des., 2014)

AutoDock4Zn: An Improved AutoDock Force Field for Small-Molecule Docking to Zinc Metalloproteins. - Diogo Santos-Martins; Stefano Forli; Maria João Ramos; Arthur J. Olson (J. Chem. Inf. Model., 2014)

A Virtual Screen Discovers Novel, Fragment-Sized Inhibitors of Mycobacterium tuberculosis InhA. - Alexander L. Perryman; Weixuan Yu; Xin Wang 067; Sean Ekins; Stefano Forli; Shao-Gang Li; Joel S. Freundlich; Peter J. Tonge; Arthur J. Olson (J. Chem. Inf. Model., 2015)

AutoDockFR: Advances in Protein-Ligand Docking with Explicitly Specified Binding Site Flexibility. - Pradeep Anand Ravindranath; Stefano Forli; David S. Goodsell; Arthur J. Olson; Michel F. Sanner (PLoS Comput. Biol., 2015)

Fragment-Based Analysis of Ligand Dockings Improves Classification of Actives. - Richard K. Belew; Stefano Forli; David S. Goodsell; T. J. O'Donnell; Arthur J. Olson (J. Chem. Inf. Model., 2016)

CellPAINT: Interactive Illustration of Dynamic Mesoscale Cellular Environments. - Adam Gardner; Ludovic Autin; Brett Barbaro; Arthur J. Olson; David S. Goodsell (IEEE Computer Graphics and Applications, 2018)

Instant Construction and Visualization of Crowded Biological Environments. - Tobias Klein; Ludovic Autin; Barbora Kozlíková; David S. Goodsell; Arthur J. Olson; M. Eduard Gröller; Ivan Viola (IEEE Trans. Vis. Comput. Graph., 2018)

Parallel Generation and Visualization of Bacterial Genome Structures. - Tobias Klein; Peter Mindek; Ludovic Autin; David S. Goodsell; Arthur J. Olson; M. Eduard Gröller; Ivan Viola (Comput. Graph. Forum, 2019)

Cuttlefish: Color Mapping for Dynamic Multi-Scale Visualizations. - Nicholas Waldin; Manuela Waldner; Mathieu Le Muzic; M. Eduard Gröller; David S. Goodsell; Ludovic Autin; Arthur J. Olson; Ivan Viola (Comput. Graph. Forum, 2019)

Massive-Scale Binding Free Energy Simulations of HIV Integrase Complexes Using Asynchronous Replica Exchange Framework Implemented on the IBM WCG Distributed Network. - Junchao Xia; William F. Flynn; Emilio Gallicchio; Keith Uplinger; Jonathan D. Armstrong; Stefano Forli; Arthur J. Olson; Ronald M. Levy (J. Chem. Inf. Model., 2019)

Integrative modeling of the HIV-1 ribonucleoprotein complex. - David S. Goodsell; Andrew Jewett; Arthur J. Olson; Stefano Forli (PLoS Comput. Biol., 2019)

Labels on Levels: Labeling of Multi-Scale Multi-Instance and Crowded 3D Biological Environments. - David Kouril; Ladislav Cmolík; Barbora Kozlíková; Hsiang-Yun Wu; Graham Johnson; David S. Goodsell; Arthur J. Olson; M. Eduard Gröller; Ivan Viola (IEEE Trans. Vis. Comput. Graph., 2019)

Mesoscope: A Web-based Tool for Mesoscale Data Integration and Curation. - Ludovic Autin; Martina Maritan; Brett A. Barbaro; Adam Gardner; Arthur J. Olson; Michel F. Sanner; David S. Goodsell (MolVa@Eurographics/EuroVis, 2020)

CellPAINT: Turnkey Illustration of Molecular Cell Biology. - Adam Gardner; Ludovic Autin; Daniel Fuentes; Martina Maritan; Benjamin A. Barad; Michaela Medina; Arthur J. Olson; Danielle A. Grotjahn; David S. Goodsell (Frontiers Bioinform., 2021)

Structure-based virtual screening workflow to identify antivirals targeting HIV-1 capsid. - Qinfang Sun; Avik Biswas; R. S. K. Vijayan; Pierrick Craveur; Stefano Forli; Arthur J. Olson; Andres Emanuelli Castaner; Karen Kirby; Stefan G. Sarafianos; Nan-Jie Deng; Ronald M. Levy (J. Comput. Aided Mol. Des., 2022)