Quantum Chemical Modeling (DFT) of Active Species on the V-W-O Catalyst Surface in Various Redox Conditions. - Artur Góra; Ewa Broclawik; Mieczyslawa Najbar (Comput. Chem., 2000)

CAVER 3.0: A Tool for the Analysis of Transport Pathways in Dynamic Protein Structures. - Eva Chovancová; Antonín Pavelka; Petr Benes; Ondrej Strnad; Jan Brezovsky; Barbora Kozlíková; Artur Góra; Vilém Sustr; Martin Klvana; Petr Medek; Lada Biedermannová; Jiri Sochor; et al. (PLoS Comput. Biol., 2012)

CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures. - Barbora Kozlíková; Eva Sebestova; Vilém Sustr; Jan Brezovsky; Ondrej Strnad; Lukas Daniel; David Bednar; Antonín Pavelka; Martin Manak; Martin Bezdeka; Petr Benes; Matus Kotry; et al. (Bioinform., 2014)

AQUA-DUCT: a ligands tracking tool. - Tomasz Magdziarz; Karolina Mitusinska; Sandra Goldowska; Alicja Pluciennik; Michal Stolarczyk; Magdalena Lugowska; Artur Góra (Bioinform., 2017)

BALCONY: an R package for MSA and functional compartments of protein variability analysis. - Alicja Pluciennik; Michal Stolarczyk; Maria Bzówka; Agata Raczynska; Tomasz Magdziarz; Artur Góra (BMC Bioinform., 2018)

AQUA-DUCT 1.0: structural and functional analysis of macromolecules from an intramolecular voids perspective. - Tomasz Magdziarz; Karolina Mitusinska; Maria Bzówka; Agata Raczynska; Agnieszka Stanczak; Michal Banas; Weronika Bagrowska; Artur Góra (Bioinform., 2020)

Geometry-Based versus Small-Molecule Tracking Method for Tunnel Identification: Benefits and Pitfalls. - Karolina Mitusinska; Maria Bzówka; Tomasz Magdziarz; Artur Góra (J. Chem. Inf. Model., 2022)

Evolution of tunnels in α/β-hydrolase fold proteins - What can we learn from studying epoxide hydrolases? - Maria Bzówka; Karolina Mitusinska; Agata Raczynska; Tomasz Skalski; Aleksandra Samol; Weronika Bagrowska; Tomasz Magdziarz; Artur Góra (PLoS Comput. Biol., 2022)

Recent Advances in Studying Toll-like Receptors with the Use of Computational Methods. - Maria Bzówka; Weronika Bagrowska; Artur Góra (J. Chem. Inf. Model., 2023)

Water Migration through Enzyme Tunnels Is Sensitive to the Choice of Explicit Water Model. - Aravind Selvaram Thirunavukarasu; Katarzyna Szleper; Gamze Tanriver; Igor Marchlewski; Karolina Mitusinska; Artur Góra; Jan Brezovsky (J. Chem. Inf. Model., 2025)