Effect of SHP-2, SOCS3, and PP2 on IL-6 signal transduction in hepatocytes. - Abhay Singh; Arul Jayaraman; Juergen Hahn (ACC, 2006)

Integrated modeling and experimental approach for determining transcription factor profiles from fluorescent reporter data. - Zuyi Huang; Fatih Senocak; Arul Jayaraman; Juergen Hahn (BMC Syst. Biol., 2008)

Solution of inverse problems for obtaining protein concentrations from fluorescent microscopy images. - Zuyi Huang; Fatih Senocak; Arul Jayaraman; Juergen Hahn (ACC, 2009)

Integrative Approach to Extract the Single-cell Dynamics of LPS-induced NFκB Signal Pathway through Flow Cytometry Measurements and Parameter Estimation. - Dongheon Lee; Yufang Ding; Arul Jayaraman; Joseph Sang-Il Kwon (ACC, 2018)

Derivation of a Dynamic Model for Palmitate-induced NFκB Signaling Pathway through Systems Biology Approach. - Dongheon Lee; Yufang Ding; Arul Jayaraman; Joseph Sang-Il Kwon (ACC, 2020)

Modeling inter-kingdom regulation of inflammatory signaling in human intestinal epithelial cells. - Shreya Maiti; Genevieve Grivas; Kyungoh Choi; Wei Dai; Yufang Ding; Daniel Penarete Acosta; Juergen Hahn; Arul Jayaraman (Comput. Chem. Eng., 2020)

Development of a hybrid model for a partially known intracellular signaling pathway through correction term estimation and neural network modeling. - Dongheon Lee; Arul Jayaraman; Joseph Sang-Il Kwon (PLoS Comput. Biol., 2020)

A Hybrid Mechanistic Data-Driven Approach for Modeling Uncertain Intracellular Signaling Pathways. - Dongheon Lee; Arul Jayaraman; Joseph Sang-Il Kwon (ACC, 2021)

Teaching at Scale: Leveraging AI to Evaluate and Elevate Engineering Education. - Jean-François Chamberland; Martin C. Carlisle; Arul Jayaraman; Krishna R. Narayanan; Sunay Palsole; Karan Watson (CoRR, 2025)