Using Biomedical Literature Mining to Consolidate the Set of Known Human Protein-Protein Interactions. - Arun K. Ramani; Razvan C. Bunescu; Raymond J. Mooney; Edward M. Marcotte (LBLODMBS@IDMB, 2005)

Comparative experiments on learning information extractors for proteins and their interactions. - Razvan C. Bunescu; Ruifang Ge; Rohit J. Kate; Edward M. Marcotte; Raymond J. Mooney; Arun K. Ramani; Yuk Wah Wong (Artif. Intell. Medicine, 2005)

Integrating Co-occurrence Statistics with Information Extraction for Robust Retrieval of Protein Interactions from Medline. - Razvan C. Bunescu; Raymond J. Mooney; Arun K. Ramani; Edward M. Marcotte (BioNLP@NAACL-HLT, 2006)

CReSCENT: CanceR Single Cell ExpressioN Toolkit. - Suluxan Mohanraj; Juan Javier Díaz-Mejía; Martin D. Pham; Hillary Elrick; Mia Husic; Shaikh Rashid; Ping Luo; Prabnur Bal; Kevin Lu; Samarth Patel; Alaina Mahalanabis; Alaine Naidas; et al. (Nucleic Acids Res., 2020)

MetaFusion: a high-confidence metacaller for filtering and prioritizing RNA-seq gene fusion candidates. - Michael Apostolides; Yue Jiang; Mia Husic; Robert Siddaway; Cynthia Hawkins; Andrei L. Turinsky; Michael Brudno; Arun K. Ramani (Bioinform., 2021)

Evaluation of single-cell RNAseq labelling algorithms using cancer datasets. - Erik Christensen; Ping Luo; Andrei L. Turinsky; Mia Husic; Alaina Mahalanabis; Alaine Naidas; Juan Javier Díaz-Mejía; Michael Brudno; Trevor J. Pugh; Arun K. Ramani; Parisa Shooshtari (Briefings Bioinform., 2023)

RNAget: an API to securely retrieve RNA quantifications. - Sean Upchurch; Emilio Palumbo; Jeremy Adams; David Bujold; Guillaume Bourque; Jared Nedzel; Keenan Graham; Meenakshi S. Kagda; Pedro Assis; Benjamin C. Hitz; Emilio Righi; Roderic Guigó; et al. (Bioinform., 2023)