NCBI-BLAST programs optimization on XSEDE resources for sustainable aquaculture. - Arun S. Seetharam; Antonio Gómez-Iglesias; Catherine M. Purcell; John R. Hyde; Philip D. Blood; Andrew J. Severin (XSEDE, 2015)

SCNBase: a genomics portal for the soybean cyst nematode (Heterodera glycines). - Rick E. Masonbrink; Tom R. Maier; Arun S. Seetharam; Parijat S. Juvale; Levi Baber; Thomas J. Baum; Andrew J. Severin (Database J. Biol. Databases Curation, 2019)

phylostratr: a framework for phylostratigraphy. - Zebulun Arendsee; Jing Li; Urminder Singh; Arun S. Seetharam; Karin S. Dorman; Eve Syrkin Wurtele (Bioinform., 2019)

fagin: synteny-based phylostratigraphy and finer classification of young genes. - Zebulun Arendsee; Jing Li; Urminder Singh; Priyanka Bhandary; Arun S. Seetharam; Eve Syrkin Wurtele (BMC Bioinform., 2019)

SequelTools: a suite of tools for working with PacBio Sequel raw sequence data. - David E. Hufnagel; Matthew B. Hufford; Arun S. Seetharam (BMC Bioinform., 2020)