Progressive Multiple Alignment Using Sequence Triplet Optimizations and Three-residue Exchange Costs. - Arun Siddharth Konagurthu; James C. Whisstock; Peter J. Stuckey (J. Bioinform. Comput. Biol., 2004)

Optimal Sum-of-Pairs Multiple Sequence Alignment Using Incremental Carrillo and Lipman Bounds. - Arun Siddharth Konagurthu; Peter J. Stuckey (J. Comput. Biol., 2006)

Structural search and retrieval using a tableau representation of protein folding patterns. - Arun Siddharth Konagurthu; Peter J. Stuckey; Arthur M. Lesk (Bioinform., 2008)

On the origin of distribution patterns of motifs in biological networks. - Arun Siddharth Konagurthu; Arthur M. Lesk (BMC Syst. Biol., 2008)

Design of an Efficient Out-of-Core Read Alignment Algorithm. - Arun Siddharth Konagurthu; Lloyd Allison; Thomas C. Conway; Bryan Beresford-Smith; Justin Zobel (WABI, 2010)

EGM: encapsulated gene-by-gene matching to identify gene orthologs and homologous segments in genomes. - Khalid Mahmood 001; Arun Siddharth Konagurthu; Jiangning Song; Ashley M. Buckle; Geoffrey I. Webb; James C. Whisstock (Bioinform., 2010)

A fast indexing approach for protein structure comparison. - Lei Zhang; James Bailey 001; Arun Siddharth Konagurthu; Kotagiri Ramamohanarao (BMC Bioinform., 2010)

Piecewise linear approximation of protein structures using the principle of minimum message length. - Arun Siddharth Konagurthu; Lloyd Allison; Peter J. Stuckey; Arthur M. Lesk (Bioinform., 2011)

Minimum message length inference of secondary structure from protein coordinate data. - Arun Siddharth Konagurthu; Arthur M. Lesk; Lloyd Allison (Bioinform., 2012)

Super: a web server to rapidly screen superposable oligopeptide fragments from the protein data bank. - James H. Collier; Arthur M. Lesk; Maria Garcia de la Banda; Arun Siddharth Konagurthu (Nucleic Acids Res., 2012)

Statistical Inference of Protein "LEGO Bricks". - Arun Siddharth Konagurthu; Lloyd Allison; David Abramson 001; Peter J. Stuckey; Arthur M. Lesk (ICDM, 2013)

An Information Measure for Comparing Top k Lists. - James H. Collier; Arun Siddharth Konagurthu (eScience, 2014)

A new statistical framework to assess structural alignment quality using information compression. - James H. Collier; Lloyd Allison; Arthur M. Lesk; Maria Garcia de la Banda; Arun Siddharth Konagurthu (Bioinform., 2014)

On Representing Protein Folding Patterns Using Non-Linear Parametric Curves. - Parthan Kasarapu; Maria Garcia de la Banda; Arun Siddharth Konagurthu (IEEE ACM Trans. Comput. Biol. Bioinform., 2014)

On Sufficient Statistics of Least-Squares Superposition of Vector Sets. - Arun Siddharth Konagurthu; Parthan Kasarapu; Lloyd Allison; James H. Collier; Arthur M. Lesk (J. Comput. Biol., 2015)

Statistical Compression of Protein Folding Patterns for Inference of Recurrent Substructural Themes. - Ramanan Subramanian; Lloyd Allison; Peter J. Stuckey; Maria Garcia de la Banda; David Abramson 001; Arthur M. Lesk; Arun Siddharth Konagurthu (DCC, 2017)

Statistical inference of protein structural alignments using information and compression. - James H. Collier; Lloyd Allison; Arthur M. Lesk; Peter J. Stuckey; Maria Garcia de la Banda; Arun Siddharth Konagurthu (Bioinform., 2017)

The Bits Between Proteins. - Dinithi Sumanaweera; Lloyd Allison; Arun Siddharth Konagurthu (DCC, 2018)

Statistical compression of protein sequences and inference of marginal probability landscapes over competing alignments using finite state models and Dirichlet priors. - Dinithi Sumanaweera; Lloyd Allison; Arun Siddharth Konagurthu (Bioinform., 2019)

On Universal Codes for Integers: Wallace Tree, Elias Omega and Variations. - Lloyd Allison; Arun Siddharth Konagurthu; Daniel F. Schmidt (CoRR, 2019)

On identifying statistical redundancy at the level of amino acid subsequences. - Sandun Rajapaksa; Dinithi Sumanaweera; Maria Garcia de la Banda; Peter J. Stuckey; David Abramson 001; Lloyd Allison; Arthur M. Lesk; Arun Siddharth Konagurthu (BIBM, 2021)

On Universal Codes for Integers: Wallace Tree, Elias Omega and Beyond. - Lloyd Allison; Arun Siddharth Konagurthu; Daniel F. Schmidt (DCC, 2021)

Neighbourhoods in the yeast regulatory network in different physiological states. - Arthur M. Lesk; Arun Siddharth Konagurthu (Bioinform., 2021)

On the reliability and the limits of inference of amino acid sequence alignments. - Sandun Rajapaksa; Dinithi Sumanaweera; Arthur M. Lesk; Lloyd Allison; Peter J. Stuckey; Maria Garcia de la Banda; David Abramson 001; Arun Siddharth Konagurthu (Bioinform., 2022)

Bridging the gaps in statistical models of protein alignment. - Dinithi Sumanaweera; Lloyd Allison; Arun Siddharth Konagurthu (Bioinform., 2022)

Getting 'ϕψχal' with proteins: minimum message length inference of joint distributions of backbone and sidechain dihedral angles. - Piyumi R. Amarasinghe; Lloyd Allison; Peter J. Stuckey; Maria Garcia de la Banda; Arthur M. Lesk; Arun Siddharth Konagurthu (Bioinform., 2023)

The divergence time of protein structures modelled by Markov matrices and its relation to the divergence of sequences. - Sandun Rajapaksa; Lloyd Allison; Peter J. Stuckey; Maria Garcia de la Banda; Arun Siddharth Konagurthu (CoRR, 2023)