Regulation of Signal Duration and the Statistical Dynamics of Kinase Activation by Scaffold Proteins. - Jason W. Locasale; Arup K. Chakraborty (PLoS Comput. Biol., 2008)

Efficient stochastic simulation of reaction-diffusion processes via direct compilation. - Mieszko Lis; Maxim N. Artyomov; Srinivas Devadas; Arup K. Chakraborty (Bioinform., 2009)

A Model for Genetic and Epigenetic Regulatory Networks Identifies Rare Pathways for Transcription Factor Induced Pluripotency. - Maxim N. Artyomov; Alexander Meissner; Arup K. Chakraborty (PLoS Comput. Biol., 2010)

Discovering statistical vulnerabilities in highly mutable viruses: A random matrix approach. - Ahmed A. Quadeer; Raymond H. Y. Louie; Karthik Shekhar; Arup K. Chakraborty; I-Ming Hsing; Matthew R. McKay (SSP, 2014)

Multiscale affinity maturation simulations to elicit broadly neutralizing antibodies against HIV. - Simone Conti; Victor Ovchinnikov; Jonathan G. Faris; Arup K. Chakraborty; Martin Karplus; Kayla G. Sprenger (PLoS Comput. Biol., 2022)

Design of immunogens for eliciting antibody responses that may protect against SARS-CoV-2 variants. - Eric Wang; Arup K. Chakraborty (PLoS Comput. Biol., 2022)