Mobility: A Medium for Computation, Communication, and Control. - Arup Mukherjee; Daniel P. Siewiorek (WMCSA, 1994)

Meta-scripts as a mechanism for complex web services. - Murthy V. Devarakonda; Arup Mukherjee; Bill Kish (HotOS, 1995)

Data Broadcasting and Reduction, Prefix Computation, and Sorting on Reduces Hypercube Parallel Computer. - Sotirios G. Ziavras; Arup Mukherjee (Parallel Comput., 1996)

Measuring Software Dependability by Robustness Benchmarking. - Arup Mukherjee; Daniel P. Siewiorek (IEEE Trans. Software Eng., 1997)

Locally Adapted Tetrahedral Meshes Using Bisection. - Douglas N. Arnold; Arup Mukherjee; Luc Pouly (SIAM J. Sci. Comput., 2000)

Classroom Exercises for Improving Understanding of Analysis and Design of Decision Support Systems. - Arup Mukherjee (J. Comput. Inf. Syst., 2002)

Promoting Higher Order Thinking in MIS/CIS Students using Class Exercises. - Arup Mukherjee (J. Inf. Syst. Educ., 2004)

Boundary Effects in Stokes' Problem with Melting. - Arup Mukherjee; John G. Stevens (International Conference on Computational Science (3), 2005)

Pharmacophore Mapping of Selective Binding Affinity of Estrogen Modulators through Classical and Space Modeling Approaches: Exploration of Bridged-Cyclic Compounds with Diarylethylene Linkage. - Subhendu Mukherjee; Shuchi Nagar; Sanchita Mullick; Arup Mukherjee; Achintya Saha (J. Chem. Inf. Model., 2007)