A method for integrative structure determination of protein-protein complexes. - Dina Schneidman-Duhovny; Andrea Rossi 005; Agustin Avila-Sakar; Seung Joong Kim; Javier A. Velázquez-Muriel; Pavel Strop; Hong Liang; Kristin A. Krukenberg; Maofu Liao; Ho Min Kim; Solmaz Sobhanifar; Volker Dötsch; et al. (Bioinform., 2012)

A Pareto-optimal compositional energy-based model for sampling and optimization of protein sequences. - Natasa Tagasovska; Nathan C. Frey; Andreas Loukas; Isidro Hötzel; Julien Lafrance-Vanasse; Ryan Lewis Kelly; Yan Wu 027; Arvind Rajpal; Richard Bonneau; Kyunghyun Cho; Stephen Ra; Vladimir Gligorijevic (CoRR, 2022)

Protein Design with Guided Discrete Diffusion. - Nate Gruver; Samuel Stanton; Nathan C. Frey; Tim G. J. Rudner; Isidro Hötzel; Julien Lafrance-Vanasse; Arvind Rajpal; Kyunghyun Cho; Andrew Gordon Wilson (NeurIPS, 2023)

AbDiffuser: full-atom generation of in-vitro functioning antibodies. - Karolis Martinkus; Jan Ludwiczak; Wei-Ching Liang; Julien Lafrance-Vanasse; Isidro Hötzel; Arvind Rajpal; Yan Wu 027; Kyunghyun Cho; Richard Bonneau; Vladimir Gligorijevic; Andreas Loukas (NeurIPS, 2023)