LogoBar: bar graph visualization of protein logos with gaps. - Åsa Pérez-Bercoff; Johan Koch; Thomas R. Bürglin (Bioinform., 2006)

SLiMScape 3.x: a Cytoscape 3 app for discovery of Short Linear Motifs in protein interaction networks. - Emily Olorin; Kevin T. O'Brien; Nicolas Palopoli; Åsa Pérez-Bercoff; Denis C. Shields; Richard J. Edwards (F1000Research, 2015)