Prediction of Protein-Protein Interactions Using Support Vector Machines. - Shinsuke Dohkan; Asako Koike; Toshihisa Takagi (BIBE, 2004)

PRIME: automatically extracted PRotein Interactions and Molecular Information databas. - Asako Koike; Toshihisa Takagi (Silico Biol., 2004)

Automatic extraction of gene/protein biological functions from biomedical text. - Asako Koike; Yoshiki Niwa; Toshihisa Takagi (Bioinform., 2005)

Improving the Performance of an SVM-Based Method for Predicting Protein-Protein Interactions. - Shinsuke Dohkan; Asako Koike; Toshihisa Takagi (Silico Biol., 2006)

Knowledge discovery based on an implicit and explicit conceptual network. - Asako Koike; Toshihisa Takagi (J. Assoc. Inf. Sci. Technol., 2007)

Figure Classification in Biomedical Literature towards Figure Mining. - Natsu Ishii; Asako Koike; Yasunori Yamamoto; Toshihisa Takagi (BIBM, 2008)

Classifying Biomedical Figures Using Combination of Bag of Keypoints and Bag of Words. - Asako Koike; Toshihisa Takagi (CISIS, 2009)

Computation of Rank and Select Functions on Hierarchical Binary String and Its Application to Genome Mapping Problems for Short-Read DNA Sequences. - Kouichi Kimura; Yutaka Suzuki; Sumio Sugano; Asako Koike (J. Comput. Biol., 2009)

Figure classification in biomedical literature to elucidate disease mechanisms, based on pathways. - Natsu Ishii; Asako Koike; Yasunori Yamamoto; Toshihisa Takagi (Artif. Intell. Medicine, 2010)

Seed-Set Construction by Equi-entropy Partitioning for Efficient and Sensitive Short-Read Mapping. - Kouichi Kimura; Asako Koike; Kenta Nakai (WABI, 2011)

SNPInterForest: A new method for detecting epistatic interactions. - Makiko Yoshida; Asako Koike (BMC Bioinform., 2011)

A Bit-Parallel Dynamic Programming Algorithm Suitable for DNA Sequence Alignment. - Kouichi Kimura; Asako Koike; Kenta Nakai (J. Bioinform. Comput. Biol., 2012)

Genome Mapping by a 60-core Processor. - Tomohiro Yasuda; Asako Koike (BIOINFORMATICS, 2014)

Ultrafast SNP analysis using the Burrows-Wheeler transform of short-read data. - Kouichi Kimura; Asako Koike (Bioinform., 2015)

Analysis of genomic rearrangements by using the Burrows-Wheeler transform of short-read data. - Kouichi Kimura; Asako Koike (BMC Bioinform., 2015)

Parallel Computation of the Burrows-Wheeler Transform of Short Reads Using Prefix Parallelism. - Kouichi Kimura; Asako Koike (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)