Computational Identification of Three-Way Junctions in Folded RNAs: A Case Study in Arabidopsis. - Adaya N. Cohen; Samuel Bocobza; Isana Veksler; Idan Gabdank; Danny Barash; Asaph Aharoni; Michal Shapira; Klara Kedem (Silico Biol., 2008)

Network-based prediction of metabolic enzymes' subcellular localization. - Shira Mintz-Oron; Asaph Aharoni; Eytan Ruppin; Tomer Shlomi (Bioinform., 2009)

KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data. - Nozomu Sakurai; Takeshi Ara; Yoshiyuki Ogata; Ryosuke Sano; Takashi Ohno; Kenjiro Sugiyama; Atsushi Hiruta; Kiyoshi Yamazaki; Kentaro Yano; Koh Aoki; Asaph Aharoni; Kazuki Hamada; et al. (Nucleic Acids Res., 2011)

Miso: an R package for multiple isotope labeling assisted metabolomics data analysis. - Yonghui Dong; Liron Feldberg; Asaph Aharoni (Bioinform., 2019)