The potential power of dynamics in epistasis analysis. - Aseel Awdeh; Hilary Phenix; Mads Kærn; Theodore J. Perkins (BCB, 2015)

Analysis of Controls in ChIP-seq. - Aseel Awdeh; Theodore J. Perkins (BCB, 2017)

Dynamics in Epistasis Analysis. - Aseel Awdeh; Hilary Phenix; Mads Kærn; Theodore J. Perkins (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

RECAP reveals the true statistical significance of ChIP-seq peak calls. - Justin G. Chitpin; Aseel Awdeh; Theodore J. Perkins (Bioinform., 2019)

WACS: improving ChIP-seq peak calling by optimally weighting controls. - Aseel Awdeh; Marcel Turcotte; Theodore J. Perkins (BMC Bioinform., 2021)