Cloud-based solution for improving usability and interactivity of metagenomic ensemble taxonomic classification methods. - Asem Alaa; Ahmed A. Metwally (BHI, 2018)

Protein Subcellular Localization Prediction Based on Internal Micro-similarities of Markov Chains. - Asem Alaa; Ayman M. Eldeib; Ahmed A. Metwally (EMBC, 2019)

ICE-NODE: Integration of Clinical Embeddings with Neural Ordinary Differential Equations. - Asem Alaa; Erik Mayer; Mauricio Barahona (MLHC, 2022)

Comparing natural language processing representations of coded disease sequences for prediction in electronic health records. - Thomas Beaney; Sneha Jha; Asem Alaa; Alexander Smith 009; Jonathan Clarke; Thomas Woodcock; Azeem Majeed; Paul Aylin; Mauricio Barahona (J. Am. Medical Informatics Assoc., 2024)