TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data. - Yan W. Asmann; Sumit Middha; Asif Hossain; Saurabh Baheti; Ying Li; High-Seng Chai; Zhifu Sun; Patrick H. Duffy; Ahmed A. Hadad; Asha A. Nair; Xiaoyu Liu; Yuji Zhang 001; et al. (Bioinform., 2012)

Network-based analysis reveals distinct association patterns in a semantic MEDLINE-based drug-disease-gene network. - Yuji Zhang 001; Cui Tao; Guoqian Jiang; Asha A. Nair; Jian Su; Christopher G. Chute; Hongfang Liu (J. Biomed. Semant., 2014)

MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing. - Krishna R. Kalari; Asha A. Nair; Jaysheel D. Bhavsar; Daniel R. O'Brien; Jaime I. Dávila; Matthew A. Bockol; Jinfu J. Nie; Xiaojia Tang; Saurabh Baheti; Jay B. Doughty; Sumit Middha; Hugues Sicotte; et al. (BMC Bioinform., 2014)

Bioinformatics Strategies for Identifying Regions of Epigenetic Deregulation Associated with Aberrant Transcript Splicing and RNA-editing. - Mia D. Champion; Ryan A. Hlady; Huihuang Yan; Jared Evans; Jeff Nie; Jeong-Heon Lee; James M. Bogenberger; Kannabiran Nandakumar; Jaime I. Dávila; Raymond M. Moore; Asha A. Nair; Daniel R. O'Brien; et al. (BIOINFORMATICS, 2015)