ChloroSSRdb: a repository of perfect and imperfect chloroplastic simple sequence repeats (cpSSRs) of green plants. - Aditi Kapil; Piyush Kant Rai; Asheesh Shanker (Database J. Biol. Databases Curation, 2014)

Coevolution based immunoinformatics approach considering variability of epitopes to combat different strains: A case study using spike protein of SARS-CoV-2. - Saurav Kumar Mishra; Prerna Priya; Gyan Prakash Rai; Rizwanul Haque; Asheesh Shanker (Comput. Biol. Medicine, 2023)

Coevolutionary dynamics of 53BP1 and its impact on TP53 interaction for DNA damage repair. - Komal Kumari; Gyan Prakash Rai; Srishti Shriya; Nooruddin Khan; Mohammad Shamsul Ola; Asheesh Shanker; Rizwanul Haque (Comput. Biol. Chem., 2025)

Computational approaches and experimental investigation for identification of potential inhibitors targeting cysteine synthase in Leishmania donovani. - Afreen Nawaz; Gyan Prakash Rai; Kuljit Singh; Asheesh Shanker; Vahab Ali (Comput. Biol. Medicine, 2025)

The coevolutionary landscape of drug resistance in epidermal growth factor receptor: A cancer perspective. - Gyan Prakash Rai; Asheesh Shanker (Comput. Biol. Medicine, 2025)