Data Mining Methods for Protein-Protein Interactions. - Zahra Nafar; Ashkan Golshani (CCECE, 2006)

Automated System for Image Analysis of Yeast Colonies: A Novel Application in Functional Genomics. - Negar Memarian; Javad Alirezaie; Ashkan Golshani (ICASSP (2), 2006)

PIPE: a protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs. - Sylvain Pitre; Frank K. H. A. Dehne; Albert Chan; James Cheetham; Alex Duong; Andrew Emili; Marinella Gebbia; Jack Greenblatt; Matthew Jessulat; Nevan J. Krogan; Xuemei Luo; Ashkan Golshani (BMC Bioinform., 2006)

Colony size measurement of the yeast gene deletion strains for functional genomics. - Negar Memarian; Matthew Jessulat; Javad Alirezaie; Nadereh Mir-Rashed; Jianhua Xu; Mehri Zareie; Myron Smith; Ashkan Golshani (BMC Bioinform., 2007)

MP-PIPE: a massively parallel protein-protein interaction prediction engine. - Andrew Schoenrock; Frank K. H. A. Dehne; James R. Green; Ashkan Golshani; Sylvain Pitre (ICS, 2011)

Binding Site Prediction for Protein-Protein Interactions and Novel Motif Discovery using Re-occurring Polypeptide Sequences. - Adam Amos-Binks; Catalin Patulea; Sylvain Pitre; Andrew Schoenrock; Yuan Gui; James R. Green; Ashkan Golshani; Frank K. H. A. Dehne (BMC Bioinform., 2011)

Efficient prediction of human protein-protein interactions at a global scale. - Andrew Schoenrock; Bahram Samanfar; Sylvain Pitre; Mohsen Hooshyar; Ke Jin; Charles A. Phillips; Hui Wang; Sadhna Phanse; Katayoun Omidi; Yuan Gui; Md Alamgir; Alex Wong 003; et al. (BMC Bioinform., 2014)

Engineering inhibitory proteins with InSiPS: the in-silico protein synthesizer. - Andrew Schoenrock; Daniel J. Burnside; Houman Moteshareie; Alex Wong 003; Ashkan Golshani; Frank Dehne (SC, 2015)

Novel function discovery with GeneMANIA: a new integrated resource for gene function prediction in Escherichia coli. - James Vlasblom; Khalid Zuberi; Harold Rodriguez; Roland Arnold; Alla Gagarinova; Viktor Deineko; Ashwani Kumar; Elisa Leung; Kamran Rizzolo; Bahram Samanfar; Luke Chang; Sadhna Phanse; et al. (Bioinform., 2015)

Positome: A method for improving protein-protein interaction quality and prediction accuracy. - Kevin Dick; Frank Dehne; Ashkan Golshani; James R. Green (CIBCB, 2017)

Designing anti-Zika virus peptides derived from predicted human-Zika virus protein-protein interactions. - Tom Kazmirchuk; Kevin Dick; Daniel J. Burnside; Brad Barnes; Houman Moteshareie; Maryam Hajikarimlou; Katayoun Omidi; Duale Ahmed; Andrew Low; Clara Lettl; Mohsen Hooshyar; Andrew Schoenrock; et al. (Comput. Biol. Chem., 2017)

A Type-2 fuzzy data fusion approach for building reliable weighted protein interaction networks with application in protein complex detection. - Adele Mehranfar; Nasser Ghadiri; Morteza Kouhsar; Ashkan Golshani (Comput. Biol. Medicine, 2017)

Insights into the suitability of utilizing brown rats (Rattus norvegicus) as a model for healing spinal cord injury with epidermal growth factor and fibroblast growth factor-II by predicting protein-protein interactions. - Nashira Grigg; Andrew Schoenrock; Kevin Dick; James R. Green; Ashkan Golshani; Alex Wong 003; Frank Dehne; Eve C. Tsai; Kyle K. Biggar (Comput. Biol. Medicine, 2019)

Large-scale data mining pipeline for identifying novel soybean genes involved in resistance against the soybean cyst nematode. - Nour Nissan; Julia Hooker; Eric Arezza; Kevin Dick; Ashkan Golshani; Benjamin Mimee; Elroy Cober; James R. Green; Bahram Samanfar (Frontiers Bioinform., 2023)