LigBase: a database of families of aligned ligand binding sites in known protein sequences and structures. - Ashley C. Stuart; Valentin A. Ilyin; Andrej Sali (Bioinform., 2002)

MODBASE, a database of annotated comparative protein structure models. - Ursula Pieper 001; Narayanan Eswar; Ashley C. Stuart; Valentin A. Ilyin; Andrej Sali (Nucleic Acids Res., 2002)

ModView, visualization of multiple protein sequences and structures. - Valentin A. Ilyin; Ursula Pieper 001; Ashley C. Stuart; Marc A. Martí-Renom; Linda McMahan; Andrej Sali (Bioinform., 2003)

Tools for comparative protein structure modeling and analysis. - Narayanan Eswar; Bino John; Nebojsa Mirkovic; András Fiser; Valentin A. Ilyin; Ursula Pieper 001; Ashley C. Stuart; Marc A. Martí-Renom; Mallur S. Madhusudhan; Bozidar Yerkovich; Andrej Sali (Nucleic Acids Res., 2003)

MODBASE, a database of annotated comparative protein structure models, and associated resources. - Ursula Pieper 001; Narayanan Eswar; Hannes Braberg; Mallur S. Madhusudhan; Fred P. Davis; Ashley C. Stuart; Nebojsa Mirkovic; Andrea Rossi 005; Marc A. Martí-Renom; András Fiser; Ben M. Webb; Daniel M. Greenblatt; et al. (Nucleic Acids Res., 2004)