Strand-seq enables reliable separation of long reads by chromosome via expectation maximization. - Maryam Ghareghani; David Porubsky; Ashley D. Sanders; Sascha Meiers; Evan E. Eichler; Jan O. Korbel; Tobias Marschall (Bioinform., 2018)

VISOR: a versatile haplotype-aware structural variant simulator for short- and long-read sequencing. - Davide Bolognini; Ashley D. Sanders; Jan O. Korbel; Alberto Magi; Vladimir Benes; Tobias Rausch (Bioinform., 2020)

breakpointR: an R/Bioconductor package to localize strand state changes in Strand-seq data. - David Porubsky; Ashley D. Sanders; Aaron Taudt; Maria Colomé-Tatché; Peter M. Lansdorp; Victor Guryev (Bioinform., 2020)

ASHLEYS: automated quality control for single-cell Strand-seq data. - Christina Gros; Ashley D. Sanders; Jan O. Korbel; Tobias Marschall; Peter Ebert (Bioinform., 2021)