TidyGEO: preparing analysis-ready datasets from Gene Expression Omnibus. - Avery Mecham; Ashlie Stephenson; Badi I. Quinteros; Grace S. Brown; Stephen R. Piccolo (J. Integr. Bioinform., 2024)

CoMIT: a bioinformatic pipeline for risk-based prediction of COVID-19 test inclusivity. - Diane M. Walker; Wendy A. Smith; Lia Gale; Jacob T. Wolff; Connor P. Healy; Hannah F. Van Hollebeke; Ashlie Stephenson; Marianne Kim (BMC Bioinform., 2025)