ADO: A formal ontology for understanding structure of information and domain knowledge of Alzheimer's disease. - Ashutosh Malhotra; Michaela Gündel; Martin Hofmann-Apitius (ICBO, 2012)

HuPSON: the human physiology simulation ontology. - Michaela Gündel; Erfan Younesi; Ashutosh Malhotra; Jiali Wang; Hui Li; Bijun Zhang; Bernard de Bono; Heinz-Theodor Mevissen; Martin Hofmann-Apitius (J. Biomed. Semant., 2013)

'HypothesisFinder: ' A Strategy for the Detection of Speculative Statements in Scientific Text. - Ashutosh Malhotra; Erfan Younesi; Harsha Gurulingappa; Martin Hofmann-Apitius (PLoS Comput. Biol., 2013)