miRcode: a map of putative microRNA target sites in the long non-coding transcriptome. - Ashwini Jeggari; Debora S. Marks; Erik Larsson (Bioinform., 2012)

NEArender: an R package for functional interpretation of 'omics' data via network enrichment analysis. - Ashwini Jeggari; Andrey Alexeyenko (BMC Bioinform., 2017)

EviNet: a web platform for network enrichment analysis with flexible definition of gene sets. - Ashwini Jeggari; Zhanna Alekseenko; Iurii Petrov; José M. Dias; Johan Ericson; Andrey Alexeyenko (Nucleic Acids Res., 2018)